Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 8.6e-57 223.4 111 100.0
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 5.3e-14 81.3 103 49.5
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 5.3e-14 81.3 103 49.5
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 1.2e-13 80.1 89 49.4
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 1.2e-13 80.1 89 49.4
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 2.6e-13 79.0 103 47.6
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 4.5e-13 78.2 98 44.9
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 5.9e-13 77.8 103 47.6
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 1.0e-12 77.0 89 47.2
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 5.0e-12 74.7 88 46.6
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 8.5e-12 73.9 89 43.8
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 2.5e-11 72.4 89 42.7
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 2.5e-11 72.4 98 37.8
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 3.2e-11 72.0 89 40.4
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 7.2e-11 70.9 98 38.8
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 7.2e-11 70.9 89 42.7
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 7.2e-11 70.9 89 42.7
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 9.4e-11 70.5 89 41.6
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 9.4e-11 70.5 89 40.4
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 1.2e-10 70.1 98 37.8
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 1.2e-10 70.1 96 39.6
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 1.6e-10 69.7 88 40.9
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 1.6e-10 69.7 88 40.9
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.6e-10 69.7 96 40.6
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 2.1e-10 69.3 89 41.6
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 2.1e-10 69.3 89 41.6
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 2.1e-10 69.3 89 40.4
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 2.1e-10 69.3 89 39.3
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 2.7e-10 68.9 89 39.3
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 2.7e-10 68.9 103 41.7
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 2.7e-10 68.9 91 41.8
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 3.6e-10 68.6 89 39.3
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 4.6e-10 68.2 89 40.4
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 4.6e-10 68.2 95 38.9
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 6.1e-10 67.8 99 41.4
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 6.1e-10 67.8 89 41.6
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 6.1e-10 67.8 89 38.2
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 6.1e-10 67.8 96 37.5
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 7.9e-10 67.4 98 37.8
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 1.0e-09 67.0 99 41.4
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 1.0e-09 67.0 88 39.8
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 1.0e-09 67.0 103 37.9
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 1.0e-09 67.0 96 39.6
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.0e-09 67.0 96 39.6
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 1.0e-09 67.0 89 40.4
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 1.4e-09 66.6 89 39.3
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 1.4e-09 66.6 89 39.3
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 1.4e-09 66.6 89 39.3
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 1.4e-09 66.6 89 39.3
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 1.4e-09 66.6 89 39.3
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 1.8e-09 66.2 89 38.2
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 2.3e-09 65.9 88 37.5
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 2.3e-09 65.9 89 38.2
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 2.3e-09 65.9 89 37.1
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 2.3e-09 65.9 89 38.2
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 2.3e-09 65.9 89 37.1
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 3.0e-09 65.5 102 38.2
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 5.1e-09 64.7 89 38.2
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 5.1e-09 64.7 103 35.0
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 6.7e-09 64.3 89 37.1
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 8.8e-09 63.9 89 37.1
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 1.1e-08 63.5 89 36.0
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 1.1e-08 63.5 89 37.1
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 1.5e-08 63.2 88 38.6
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 1.9e-08 62.8 89 37.1
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 1.9e-08 62.8 35 77.1
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 3.3e-08 62.0 103 35.9
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 3.3e-08 62.0 83 36.1
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 4.3e-08 61.6 89 37.1
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 7.4e-08 60.8 103 35.9
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 7.4e-08 60.8 103 35.9
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 7.4e-08 60.8 103 35.9
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 1.7e-07 59.7 103 35.0
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 1.7e-07 59.7 89 37.1
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 2.8e-07 58.9 89 31.5
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 3.7e-07 58.5 103 35.0
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 3.7e-07 58.5 103 35.0
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 4.8e-07 58.2 103 35.0
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 4.8e-07 58.2 97 32.0
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 6.3e-07 57.8 88 38.6
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 8.2e-07 57.4 103 35.9
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 1.1e-06 57.0 103 34.0
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 1.8e-06 56.2 103 35.9
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 6.9e-06 54.3 36 55.6
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 6.9e-06 54.3 50 44.0
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 9.1e-06 53.9 95 35.8


User provided reference genes

Program Settings