Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 0.0e+00 1077.0 545 100.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.3e-274 948.0 547 88.8
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 9.5e-274 946.4 551 88.6
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.4e-256 889.4 548 80.7
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 3.7e-254 881.3 548 80.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.1e-251 870.9 548 78.5
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.3e-250 868.2 553 80.3
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 7.3e-250 867.1 548 78.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.4e-237 825.5 552 78.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.8e-233 811.2 540 79.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.8e-225 785.4 554 72.6
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.7e-225 785.0 548 73.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-215 753.4 549 68.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-215 751.5 547 68.6
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-215 751.5 547 68.6
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.8e-215 751.1 549 67.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-204 716.8 551 64.6
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.2e-198 696.0 559 63.0
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.0e-198 694.9 557 64.1
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-197 693.0 577 60.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-196 690.3 549 64.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.1e-196 688.0 559 63.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.8e-195 686.4 555 64.1
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.8e-193 679.1 553 62.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.4e-192 676.0 553 62.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 3.1e-192 675.6 554 63.9
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.1e-192 675.2 547 63.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.5e-191 673.3 556 62.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.5e-191 673.3 549 62.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 5.9e-191 671.4 554 63.2
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 7.7e-191 671.0 546 62.6
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.9e-190 669.1 553 63.3
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.0e-190 668.3 558 63.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 5.0e-190 668.3 569 60.6
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.5e-190 667.5 547 64.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.4e-189 666.8 555 63.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.2e-189 665.2 551 63.0
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 9.4e-189 664.1 555 62.3
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 9.4e-189 664.1 548 62.4
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 8.0e-188 661.0 561 61.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.3e-187 659.4 553 63.1
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-187 658.7 563 60.0
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-187 658.3 564 60.8
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.5e-186 656.8 553 61.8
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.0e-186 656.4 563 62.2
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.4e-186 655.2 566 60.8
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.7e-186 654.8 541 63.4
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.7e-186 654.8 551 61.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.1e-184 650.6 557 60.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.8e-184 649.8 549 62.5
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.1e-184 648.7 563 60.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 7.0e-184 647.9 562 59.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.0e-183 646.4 553 61.5
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.2e-182 642.9 550 61.6
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.0e-182 641.7 541 61.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.9e-181 639.8 561 58.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.2e-181 638.6 548 60.4
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 9.4e-181 637.5 548 59.5
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.6e-180 636.7 545 61.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.7e-180 636.0 565 60.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-179 633.6 544 60.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.5e-178 630.2 564 59.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.0e-178 629.8 561 59.5
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-178 629.4 549 59.9
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.4e-178 628.6 570 59.5
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.3e-177 627.1 565 59.8
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-177 627.1 555 59.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.3e-177 624.8 557 60.7
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-176 624.0 570 59.5
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.8e-176 623.2 568 59.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-176 622.9 570 58.9
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.4e-176 622.9 570 58.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-176 622.9 546 59.9
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.4e-176 622.9 548 59.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-176 621.7 570 59.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-176 621.7 560 59.3
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-176 621.3 548 59.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.0e-176 621.3 492 65.2
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 9.1e-176 620.9 570 59.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-175 620.2 575 56.7
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.0e-174 617.5 564 59.4
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.0e-174 617.5 568 59.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-174 617.1 548 58.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-174 616.7 562 59.3
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.2e-174 616.3 571 59.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 6.5e-174 614.8 552 59.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.1e-173 614.0 552 59.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.9e-173 613.2 443 70.0
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.5e-173 612.8 465 66.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.5e-173 612.8 556 59.0
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 4.2e-173 612.1 552 59.1
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-172 609.8 563 58.4
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 8.0e-172 607.8 567 58.0
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.3e-171 606.3 577 55.8
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-171 605.9 555 58.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.6e-170 602.8 570 56.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-170 602.1 414 70.3
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.7e-169 600.1 556 58.1
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.2e-169 599.7 554 58.5
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-168 596.3 565 58.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.1e-168 595.5 575 53.7
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.0e-166 590.9 562 55.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.1e-165 587.4 568 57.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.5e-165 587.0 564 55.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.5e-165 585.1 548 57.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-163 579.3 562 56.2
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.0e-158 562.0 584 50.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 4.3e-157 558.9 552 56.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.6e-157 558.5 445 64.0
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.4e-155 553.9 441 62.8
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 9.8e-154 547.7 524 57.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 9.8e-154 547.7 561 54.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.2e-153 546.6 558 54.1
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.0e-150 537.7 546 52.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 3.0e-150 536.2 404 66.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 5.0e-150 535.4 558 53.2
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.9e-149 533.5 560 54.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-146 523.1 386 67.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 3.3e-141 506.1 496 53.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 4.1e-136 489.2 339 69.6
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-134 484.2 532 51.5
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.2e-130 471.1 545 50.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 8.4e-129 464.9 558 48.6
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.1e-124 448.4 301 72.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.1e-111 407.1 479 50.3
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.3e-110 404.4 448 44.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 4.0e-107 392.9 392 52.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 3.0e-94 350.1 501 45.7
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.4e-88 331.3 383 42.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.1e-83 313.2 371 46.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.6e-82 310.5 190 76.3
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-80 305.1 313 55.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-80 304.3 292 55.1
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-76 291.6 210 64.8
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.5e-72 277.3 358 45.5
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-67 260.4 155 80.0
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.5e-50 203.8 199 53.8
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.1e-43 180.3 279 45.2
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 7.8e-42 176.0 225 48.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.6e-40 169.9 292 38.7
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-37 161.8 174 53.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 6.6e-33 146.4 472 26.9
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.4e-29 134.0 96 64.6
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-28 130.6 92 65.2
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-19 102.4 74 63.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.4e-19 101.3 70 65.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 5.4e-19 100.1 70 64.3
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.0e-17 95.9 180 30.0
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.7e-17 95.1 78 59.0
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 3.6e-15 87.4 115 43.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.2e-15 86.7 153 39.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 5.8e-13 80.1 58 67.2
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.1e-10 71.6 73 49.3
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.9e-09 67.4 116 41.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.3e-08 64.3 55 56.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.3e-08 63.9 74 48.6


User provided reference genes

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