Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g090645 Medicago truncatula HOM05D011213 ORTHO05D012867 6.0e-100 367.9 237 100.0
Medtr2g048835 Medicago truncatula HOM05D000017 ORTHO05D000013 5.1e-30 135.6 88 73.9
Medtr5g081480 Medicago truncatula HOM05D000017 ORTHO05D009934 4.1e-24 115.9 80 62.5
TPR.G28103 Trifolium pratense HOM05D000017 ORTHO05D000013 6.6e-22 108.6 89 59.6
Medtr2g461790 Medicago truncatula HOM05D000017 ORTHO05D000013 1.2e-20 104.4 76 64.5
Medtr6g462630 Medicago truncatula HOM05D000017 ORTHO05D000013 1.2e-20 104.4 85 63.5
Medtr7g090610 Medicago truncatula HOM05D000017 ORTHO05D000013 1.3e-14 84.3 60 60.0
Ca_03485_v3 Cicer arietinum L. HOM05D008773 ORTHO05D010496 6.6e-14 82.0 75 48.0
VMungo0647G1632 Vigna mungo HOM05D008773 ORTHO05D009934 1.9e-13 80.5 85 45.9
VMungo0251G2291 Vigna mungo HOM05D000005 ORTHO05D000012 4.3e-13 79.3 83 45.8
Ca_14918_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 8.1e-12 75.1 75 44.0
FvH4_2g11355 Fragaria vesca HOM05D000017 ORTHO05D000013 1.4e-11 74.3 76 47.4
VMungo1383G2865 Vigna mungo HOM05D000017 ORTHO05D009934 2.4e-11 73.6 78 46.2
VMungo1309G0510 Vigna mungo HOM05D000017 ORTHO05D000013 5.3e-11 72.4 84 44.0
Psat6g176000 Pisum sativum HOM05D000017 ORTHO05D000013 1.2e-10 71.2 84 44.0
RcHm_v2.0_Chr6g0266931 Rosa chinensis HOM05D000017 ORTHO05D000013 1.5e-10 70.9 76 47.4
VMungo1309G0288 Vigna mungo HOM05D000017 ORTHO05D000013 1.5e-10 70.9 86 41.9
Psat5g111320 Pisum sativum HOM05D000017 ORTHO05D000013 3.4e-10 69.7 84 42.9
RcHm_v2.0_Chr5g0079641 Rosa chinensis HOM05D000017 ORTHO05D000013 3.4e-10 69.7 70 48.6
VMungo0464G0568 Vigna mungo HOM05D000017 ORTHO05D000013 4.4e-10 69.3 70 45.7
VMungo0540G1571 Vigna mungo HOM05D000017 ORTHO05D009934 4.4e-10 69.3 71 43.7
VMungo0647G0885 Vigna mungo HOM05D000654 ORTHO05D002330 7.6e-10 68.6 72 41.7
Hma1.2p1_1076F.1_g254590 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.2e-09 67.0 76 43.4
FvH4_3g20431 Fragaria vesca HOM05D000017 ORTHO05D000013 2.9e-09 66.6 87 39.1
FvH4_6g32522 Fragaria vesca HOM05D000017 ORTHO05D000013 2.9e-09 66.6 70 47.1
FvH4_6g39831 Fragaria vesca HOM05D000017 ORTHO05D000013 2.9e-09 66.6 70 47.1
Lj3P501T4 Lonicera japonica HOM05D000017 ORTHO05D000013 2.9e-09 66.6 82 40.2
RcHm_v2.0_Chr7g0223891 Rosa chinensis HOM05D000017 ORTHO05D000013 2.9e-09 66.6 83 41.0
vmacro08788 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 2.9e-09 66.6 81 43.2
RcHm_v2.0_Chr3g0494501 Rosa chinensis HOM05D011213 ORTHO05D012867 3.8e-09 66.2 75 44.0
Hma1.2p1_0199F.1_g085640 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.4e-09 65.5 72 43.1
Psat1g085240 Pisum sativum HOM05D000017 ORTHO05D000013 8.4e-09 65.1 88 42.0
RcHm_v2.0_Chr5g0080361 Rosa chinensis HOM05D000017 ORTHO05D000013 8.4e-09 65.1 78 41.0
FvH4_1g10352 Fragaria vesca HOM05D000017 ORTHO05D000013 1.1e-08 64.7 70 47.1
FvH4_3g31622 Fragaria vesca HOM05D008248 ORTHO05D010456 1.1e-08 64.7 78 41.0
FvH4_1g09982 Fragaria vesca HOM05D011213 ORTHO05D012867 1.4e-08 64.3 68 47.1
Rhsim06G0115000 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.4e-08 64.3 71 40.8
TWI77G0979 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.9e-08 63.9 80 41.2
Prupe.8G015400 Prunus persica HOM05D011213 ORTHO05D012867 2.4e-08 63.5 71 39.4
Hma1.2p1_0048F.1_g028050 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.2e-08 63.2 71 43.7
Rhsim05G0009400 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.2e-08 63.2 71 39.4
THA.LOC104800229 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 3.2e-08 63.2 71 47.9
vmacro23380 Vaccinium macrocarpon HOM05D007604 ORTHO05D008966 3.2e-08 63.2 88 42.0
BolC8t47174H Brassica oleracea HOM05D027291 ORTHO05D022061 4.2e-08 62.8 82 43.9
COL.COLO4_22356 Corchorus olitorius HOM05D010554 ORTHO05D012512 4.2e-08 62.8 70 45.7
COL.COLO4_38240 Corchorus olitorius HOM05D008085 ORTHO05D010173 4.2e-08 62.8 70 45.7
Dinv26433 Davidia involucrata HOM05D000017 ORTHO05D000013 4.2e-08 62.8 77 41.6
Hma1.2p1_1228F.1_g268660 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 62.8 90 40.0
Hma1.2p1_2618F.1_g325525 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 62.8 90 40.0
Medtr6g022470 Medicago truncatula HOM05D000017 ORTHO05D000013 4.2e-08 62.8 74 40.5
Dinv05752 Davidia involucrata HOM05D007604 ORTHO05D008966 5.4e-08 62.4 67 44.8
FvH4_1g29132 Fragaria vesca HOM05D000017 ORTHO05D000013 5.4e-08 62.4 70 44.3
Hma1.2p1_0400F.1_g144590 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 5.4e-08 62.4 72 41.7
Hma1.2p1_0104F.1_g050035 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.3e-08 61.6 71 43.7
Hma1.2p1_0133F.1_g061350 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.3e-08 61.6 90 40.0
Medtr3g436320 Medicago truncatula HOM05D000017 ORTHO05D010633 9.3e-08 61.6 75 42.7
Psat1g121080 Pisum sativum HOM05D024207 ORTHO05D000013 9.3e-08 61.6 80 37.5
QL09p029670 Quercus lobata HOM05D000017 ORTHO05D000013 9.3e-08 61.6 71 42.3
TPR.G39608 Trifolium pratense HOM05D000017 ORTHO05D000013 9.3e-08 61.6 77 44.2
COL.COLO4_28739 Corchorus olitorius HOM05D000017 ORTHO05D000013 1.2e-07 61.2 69 40.6
Psat3g030360 Pisum sativum HOM05D000017 ORTHO05D000013 1.2e-07 61.2 60 46.7
Rhsim03G0174600 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.2e-07 61.2 80 40.0
Rhsim04G0159500 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.2e-07 61.2 75 41.3
Hma1.2p1_1218F.1_g267660 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 1.6e-07 60.8 82 39.0
Psat6g148520 Pisum sativum HOM05D000017 ORTHO05D000013 2.1e-07 60.5 68 41.2
PGR031G3656 Punica granatum HOM05D000017 ORTHO05D000013 2.1e-07 60.5 71 38.0
PGR067G0001 Punica granatum HOM05D000017 ORTHO05D000013 2.1e-07 60.5 71 38.0
Sed0005941 Sechium edule HOM05D000017 ORTHO05D000013 2.1e-07 60.5 79 36.7
Hma1.2p1_0472F.1_g159930 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.7e-07 60.1 77 39.0
Rhsim08G0130100 Rhododendron simsii HOM05D000187 ORTHO05D000230 2.7e-07 60.1 71 40.8
Rhsim13G0068100 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-07 60.1 71 38.0
TWI14G0267 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.7e-07 60.1 79 38.0
Hma1.2p1_0181F.1_g079980 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.5e-07 59.7 71 39.4
THA.LOC104821565 Tarenaya hassleriana HOM05D011852 ORTHO05D015483 3.5e-07 59.7 71 43.7
Hma1.2p1_1104F.1_g257430 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.6e-07 59.3 71 40.8
RcHm_v2.0_Chr1g0352521 Rosa chinensis HOM05D011213 ORTHO05D012867 4.6e-07 59.3 63 46.0
Hma1.2p1_0060F.1_g032860 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 58.9 87 37.9
Hma1.2p1_0185F.1_g081470 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 58.9 90 36.7
Hma1.2p1_0580F.1_g182840 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 58.9 79 41.8
Rhsim09G0049900 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.0e-07 58.9 71 39.4
VMungo0331G1062 Vigna mungo HOM05D000005 ORTHO05D000012 6.0e-07 58.9 85 40.0
Atru.chr6.3055 Acer truncatum HOM05D000017 ORTHO05D000013 7.9e-07 58.5 72 41.7
Atru.chr9.1875 Acer truncatum HOM05D000017 ORTHO05D000013 7.9e-07 58.5 68 39.7
Rhsim13G0199100 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.9e-07 58.5 75 41.3
TPR.G7517 Trifolium pratense HOM05D000017 ORTHO05D000013 7.9e-07 58.5 81 43.2
Dinv14599 Davidia involucrata HOM05D000017 ORTHO05D000013 1.0e-06 58.2 74 41.9
RcHm_v2.0_Chr6g0264981 Rosa chinensis HOM05D011213 ORTHO05D012867 1.0e-06 58.2 72 41.7
Hma1.2p1_0624F.1_g191260 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 1.3e-06 57.8 77 42.9
Rhsim04G0080300 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.3e-06 57.8 78 34.6
Rhsim13G0069300 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.3e-06 57.8 83 37.3
THA.LOC104803431 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 1.3e-06 57.8 71 43.7
THA.LOC104806000 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 1.3e-06 57.8 71 43.7
THA.LOC104824602 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 1.3e-06 57.8 71 43.7
Actinidia29263 Actinidia chinensis HOM05D000017 ORTHO05D000013 1.7e-06 57.4 71 38.0
CANSAT56G2167 Cannabis sativa HOM05D000017 ORTHO05D000013 1.7e-06 57.4 74 41.9
FvH4_6g25413 Fragaria vesca HOM05D000017 ORTHO05D000013 1.7e-06 57.4 82 37.8
Psat7g053960 Pisum sativum HOM05D000017 ORTHO05D000013 1.7e-06 57.4 63 41.3
QL09p032027 Quercus lobata HOM05D000017 ORTHO05D000013 1.7e-06 57.4 73 42.5
Sopen09g007310 Solanum pennellii HOM05D000017 ORTHO05D009185 1.7e-06 57.4 82 35.4
THA.LOC104806013 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 1.7e-06 57.4 85 38.8
Atru.chr5.2468 Acer truncatum HOM05D000017 ORTHO05D000013 2.3e-06 57.0 71 40.8
Aa31LG4G12970 Aethionema arabicum HOM05D000017 ORTHO05D000013 2.3e-06 57.0 96 37.5
Lj6C505T2 Lonicera japonica HOM05D015370 ORTHO05D000013 2.3e-06 57.0 74 40.5
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.0e-06 56.6 71 42.3
CSS0005205 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 3.0e-06 56.6 71 39.4
CSS0012263 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 3.0e-06 56.6 71 39.4
CSS0030640 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 3.0e-06 56.6 71 39.4
Hma1.2p1_1816F.1_g303950 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.0e-06 56.6 77 36.4
Hma1.2p1_0026F.1_g016405 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 56.2 71 43.7
Hma1.2p1_0292F.1_g115670 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 56.2 71 43.7
Hma1.2p1_1314F.1_g275035 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 56.2 71 43.7
QL01p000385 Quercus lobata HOM05D000017 ORTHO05D000013 3.9e-06 56.2 68 39.7
Rhsim04G0059700 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.9e-06 56.2 71 42.3
TWI09G1270 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.9e-06 56.2 68 41.2
TWI15G0100 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.9e-06 56.2 91 36.3
TWI36G0598 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.9e-06 56.2 68 41.2
TWI79G1478 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.9e-06 56.2 68 41.2
CSS0039812 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.1e-06 55.8 71 39.4
Lj1C475T3 Lonicera japonica HOM05D015370 ORTHO05D021357 5.1e-06 55.8 85 37.6
Medtr2g020400 Medicago truncatula HOM05D009002 ORTHO05D012070 5.1e-06 55.8 70 42.9
Nitab4.5_0000682g0020 Nicotiana tabacum HOM05D003329 ORTHO05D006664 5.1e-06 55.8 71 38.0
THA.LOC104818597 Tarenaya hassleriana HOM05D000017 ORTHO05D000013 5.1e-06 55.8 71 40.8
TWI81G0891 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 5.1e-06 55.8 73 38.4
Atru.chr11.363 Acer truncatum HOM05D000017 ORTHO05D000013 6.6e-06 55.5 72 37.5
CSS0043105 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 6.6e-06 55.5 71 39.4
CANSAT11G0617 Cannabis sativa HOM05D000017 ORTHO05D000013 6.6e-06 55.5 80 37.5
FAN17G1279 Fragaria x ananassa HOM05D011213 ORTHO05D012867 6.6e-06 55.5 63 42.9
Peaxi162Scf00139g00823 Petunia axillaris HOM05D000017 ORTHO05D000308 6.6e-06 55.5 74 40.5
Rhsim02G0019500 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.6e-06 55.5 84 38.1
CANSAT21G0768 Cannabis sativa HOM05D000017 ORTHO05D000013 8.7e-06 55.1 71 42.3
CANSAT21G2291 Cannabis sativa HOM05D000017 ORTHO05D000013 8.7e-06 55.1 80 36.2
CANSAT64G2354 Cannabis sativa HOM05D000017 ORTHO05D000013 8.7e-06 55.1 70 42.9
CANSAT80G0557 Cannabis sativa HOM05D000017 ORTHO05D000013 8.7e-06 55.1 80 36.2
ECA238G0389 Erigeron canadensis HOM05D000017 ORTHO05D000013 8.7e-06 55.1 75 42.7
Psat6g230440 Pisum sativum HOM05D000017 ORTHO05D000013 8.7e-06 55.1 63 41.3
PGR004G0931 Punica granatum HOM05D000017 ORTHO05D000013 8.7e-06 55.1 78 38.5
PGR044G2516 Punica granatum HOM05D000017 ORTHO05D000013 8.7e-06 55.1 72 43.1
Rhsim08G0098700 Rhododendron simsii HOM05D000017 ORTHO05D000013 8.7e-06 55.1 71 39.4


User provided reference genes

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