Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.3e-112 409.1 231 100.0
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 4.6e-60 235.3 239 63.6
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.0e-60 235.0 236 65.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 3.7e-54 215.7 241 64.3
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 3.2e-53 212.6 237 65.4
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 6.2e-41 171.8 245 48.2
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.8e-38 162.5 245 49.8
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.9e-38 162.2 243 46.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 4.2e-37 159.1 235 48.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 9.3e-37 157.9 236 47.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.1e-36 156.8 252 43.3
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.7e-36 156.4 247 49.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 4.3e-34 149.1 233 53.2
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 7.3e-34 148.3 233 44.2
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.6e-33 146.0 255 43.1
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.6e-33 146.0 255 43.1
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.2e-33 145.2 234 47.0
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.4e-32 144.1 263 48.7
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 9.0e-32 141.4 263 47.5
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 9.0e-32 141.4 243 42.4
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 9.0e-32 141.4 246 41.9
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.2e-31 141.0 248 47.6
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.2e-30 136.7 263 41.1
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.9e-30 136.3 246 48.0
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 6.4e-30 135.2 223 41.3
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.1e-29 134.4 229 43.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.4e-29 134.0 229 43.2
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 3.2e-29 132.9 247 44.5
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.2e-29 132.5 251 40.6
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.1e-29 131.7 236 47.5
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 7.1e-29 131.7 246 41.5
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.1e-28 130.2 238 49.2
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.7e-28 129.8 230 42.2
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.7e-28 129.8 256 39.5
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 3.5e-28 129.4 249 43.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.9e-28 128.3 95 67.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.0e-27 127.9 232 42.7
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.3e-27 127.5 237 43.9
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.8e-27 127.1 230 37.8
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.8e-27 127.1 237 42.2
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 3.0e-27 126.3 244 41.4
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 6.7e-27 125.2 185 43.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 6.7e-27 125.2 160 50.6
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 8.7e-27 124.8 276 35.9
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.1e-26 124.4 264 45.5
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-26 124.4 254 39.0
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.5e-26 124.0 238 38.7
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.5e-26 124.0 231 41.1
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-26 123.6 231 38.1
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.9e-26 123.6 234 38.5
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 3.3e-26 122.9 233 41.2
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 3.3e-26 122.9 233 41.2
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.3e-26 122.9 232 38.8
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.3e-26 122.5 230 36.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 4.3e-26 122.5 160 56.9
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.6e-26 122.1 79 75.9
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 5.6e-26 122.1 230 36.5
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.6e-26 122.1 241 44.8
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 7.4e-26 121.7 251 41.0
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.1e-25 120.2 236 39.4
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.1e-25 120.2 235 40.4
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.1e-25 120.2 230 33.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.8e-25 119.8 233 38.2
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.7e-25 119.4 229 36.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 4.8e-25 119.0 276 39.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 6.2e-25 118.6 191 40.8
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 6.2e-25 118.6 262 44.3
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.1e-25 118.2 243 45.7
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.1e-24 117.9 85 68.2
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.4e-24 117.5 253 42.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.4e-24 117.5 90 64.4
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.8e-24 117.1 243 44.4
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.8e-24 117.1 238 40.3
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.8e-24 117.1 247 44.1
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 5.3e-24 115.5 231 42.4
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.3e-24 115.5 237 40.9
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.3e-24 115.5 228 41.2
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 9.0e-24 114.8 235 37.9
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.2e-23 114.4 230 39.1
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.5e-23 114.0 198 38.9
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.5e-23 114.0 234 39.7
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-23 114.0 241 44.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.5e-23 114.0 165 45.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-23 113.6 231 40.3
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-23 113.6 232 37.9
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.0e-23 113.6 254 39.8
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 2.6e-23 113.2 246 45.1
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 3.4e-23 112.8 234 40.6
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 4.5e-23 112.5 237 40.5
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.5e-23 112.5 194 38.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.8e-23 112.1 231 41.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 5.8e-23 112.1 96 61.5
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 7.6e-23 111.7 226 38.5
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 9.9e-23 111.3 227 37.9
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.3e-22 110.9 262 42.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.7e-22 110.5 89 61.8
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.7e-22 110.5 237 38.8
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 1.7e-22 110.5 82 65.9
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.2e-22 110.2 225 37.3
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.9e-22 109.8 229 33.2
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 2.9e-22 109.8 95 60.0
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.8e-22 109.4 82 61.0
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.8e-22 109.4 230 34.3
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.8e-22 109.4 82 65.9
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 3.8e-22 109.4 94 58.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 3.8e-22 109.4 79 64.6
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.9e-22 109.0 235 34.0
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.9e-22 109.0 235 34.0
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 4.9e-22 109.0 78 70.5
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 4.9e-22 109.0 90 61.1
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 6.4e-22 108.6 79 63.3
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.1e-21 107.8 76 64.5
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 2.5e-21 106.7 88 60.2
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.2e-21 106.3 236 40.7
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 3.2e-21 106.3 205 38.5
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.2e-21 106.3 205 38.5
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.6e-20 104.0 227 42.7
TPR.G1736 Trifolium pratense HOM05D004801 ORTHO05D005747 1.6e-20 104.0 115 64.3
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.6e-20 104.0 97 52.6
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.1e-20 103.6 82 62.2
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-20 102.8 225 35.1
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-20 102.8 225 35.1
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.8e-19 100.5 241 39.8
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 1.8e-19 100.5 258 34.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.8e-19 100.5 99 50.5
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.3e-19 100.1 208 36.5
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.3e-19 100.1 240 35.4
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.7e-19 98.2 241 39.4
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 8.7e-19 98.2 97 51.5
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.1e-18 97.8 203 36.9
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-18 97.1 154 38.3
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.9e-18 97.1 154 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.6e-17 94.0 100 49.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 2.8e-17 93.2 163 38.7
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.8e-17 93.2 230 37.4
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 3.7e-17 92.8 227 30.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.5e-15 87.4 79 55.7
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 4.5e-15 85.9 79 54.4
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 8.4e-14 81.6 79 51.9
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.9e-13 80.5 191 35.6
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-06 58.2 227 28.6


User provided reference genes

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