Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.9e-303 1045.0 517 100.0
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.1e-226 788.5 517 78.9
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.0e-209 732.6 519 72.6
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.3e-152 543.1 514 56.6
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 6.7e-152 541.6 518 54.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 7.4e-151 538.1 514 55.8
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 6.2e-150 535.0 516 56.4
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 6.2e-150 535.0 516 56.0
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 7.4e-143 511.5 499 53.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 9.3e-138 494.6 510 54.5
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.7e-134 482.6 503 52.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.6e-129 467.2 522 48.7
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 5.3e-125 452.2 509 48.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 5.9e-124 448.7 531 46.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.9e-124 448.7 516 48.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.7e-123 447.2 523 47.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.0e-123 445.7 510 47.5
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.1e-122 444.5 525 45.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-122 444.1 504 48.4
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.4e-122 444.1 504 48.4
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.5e-122 443.4 520 46.7
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 3.2e-122 443.0 500 48.8
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-121 441.0 544 45.6
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 4.7e-121 439.1 507 47.9
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.0e-120 438.0 520 46.5
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.0e-120 436.4 509 47.2
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.7e-120 435.3 550 44.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.0e-119 433.7 531 46.0
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 3.3e-119 433.0 523 44.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.7e-119 432.2 504 47.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 7.4e-119 431.8 531 45.6
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 9.7e-119 431.4 520 45.8
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.7e-118 429.5 522 45.6
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-117 427.9 523 45.1
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.4e-117 427.6 531 45.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.1e-117 426.4 553 43.8
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.1e-117 426.4 553 43.8
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 5.3e-117 425.6 542 45.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.2e-116 424.5 520 43.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.6e-116 424.1 533 43.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.6e-116 424.1 541 44.0
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.5e-116 422.5 520 45.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 4.5e-116 422.5 530 44.3
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 5.9e-116 422.2 528 45.8
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.8e-115 419.5 531 45.0
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 9.4e-114 414.8 536 43.7
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.2e-113 414.5 527 45.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 3.6e-113 412.9 501 46.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.6e-113 412.9 521 43.6
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 6.1e-113 412.1 559 42.9
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.3e-112 410.2 527 43.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.3e-112 410.2 535 43.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.0e-112 409.8 514 44.6
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-112 409.5 549 43.0
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 5.2e-112 409.1 557 42.4
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.6e-111 406.8 529 43.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.3e-111 406.4 500 46.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-110 404.1 531 42.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.4e-109 401.0 515 43.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.2e-108 397.9 528 43.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.0e-108 397.1 524 43.5
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.7e-108 396.7 512 42.4
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-107 394.4 520 42.7
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 3.8e-107 392.9 494 44.7
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 6.5e-107 392.1 520 41.9
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.1e-105 387.1 518 40.7
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 4.7e-105 386.0 514 42.0
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.0e-105 385.2 518 40.5
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.2e-104 382.5 513 41.1
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 5.2e-104 382.5 527 42.1
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 6.8e-104 382.1 506 44.3
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.8e-104 381.7 469 45.6
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.5e-103 380.9 510 43.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 4.8e-102 375.9 510 41.2
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.4e-101 374.4 545 41.1
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.4e-101 374.4 506 41.7
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 3.1e-101 373.2 528 40.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 5.4e-101 372.5 507 40.2
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.0e-101 372.1 500 44.2
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.0e-101 372.1 551 39.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.2e-100 371.3 527 40.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.5e-100 369.8 512 40.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.9e-100 369.0 511 40.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.8e-99 366.3 533 38.6
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.8e-99 366.3 559 40.3
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.0e-99 365.9 514 40.5
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.5e-98 364.4 537 39.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.9e-98 364.0 500 41.0
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.5e-98 363.6 556 40.5
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-97 361.3 500 38.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.2e-97 361.3 500 38.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 3.6e-97 359.8 519 40.7
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.6e-97 359.8 523 40.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.0e-96 358.2 538 39.4
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-96 357.8 515 40.8
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.8e-96 357.5 503 39.0
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.8e-96 357.5 514 39.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.8e-96 357.5 501 38.7
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.3e-96 357.1 502 39.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 2.0e-95 354.0 521 39.9
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 7.5e-95 352.1 512 38.9
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.7e-94 350.9 553 38.5
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 8.3e-94 348.6 532 38.7
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.5e-90 337.8 507 38.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.9e-90 337.4 516 37.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 3.3e-90 336.7 490 40.6
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.6e-89 334.3 513 37.0
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.6e-89 333.2 497 40.8
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 6.1e-89 332.4 516 36.4
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 8.3e-86 322.0 471 40.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.9e-85 320.9 464 41.4
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.4e-85 320.5 549 34.8
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.6e-84 317.8 505 35.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-83 313.5 500 39.0
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 8.0e-81 305.4 501 36.7
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 8.9e-80 302.0 513 35.1
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.3e-75 288.1 393 38.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.9e-74 284.3 555 34.1
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.3e-74 283.1 500 37.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-73 280.0 500 37.2
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.1e-69 268.5 462 34.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-69 268.1 493 35.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.8e-63 246.1 488 33.0
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-63 245.7 456 33.3
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-61 241.5 456 33.3
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-57 227.6 516 31.0
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-43 180.6 454 29.7
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-43 180.6 454 29.7
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.7e-43 179.5 365 33.7
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.5e-42 178.3 303 36.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 4.0e-40 170.2 256 39.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 6.9e-40 169.5 188 56.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.9e-38 163.3 529 25.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.5e-36 157.1 460 26.3
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 6.0e-36 156.4 486 26.7
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.9e-36 156.0 529 25.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.2e-33 146.4 120 55.0
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 6.9e-32 142.9 390 26.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.2e-31 142.1 168 45.8
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 8.4e-30 136.0 485 24.9
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.5e-29 134.4 434 26.7
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 3.5e-28 130.6 144 49.3
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.5e-21 107.8 415 25.3
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 4.6e-20 103.6 495 21.2
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.4e-18 96.3 377 23.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.6e-15 87.8 78 50.0
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-12 79.0 400 18.8
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.7e-10 69.3 287 24.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.8e-09 67.8 73 45.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.1e-08 63.9 73 41.1
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 7.0e-08 63.2 57 45.6
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 9.1e-08 62.8 57 49.1
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 1.2e-07 62.4 206 23.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.5e-07 62.0 156 29.5
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 1.5e-07 62.0 206 23.8
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.0e-07 61.6 56 42.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-07 61.6 55 45.5
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 3.8e-06 57.4 98 31.6


User provided reference genes

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