Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.7e-45 185.7 92 100.0
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 2.8e-37 158.3 92 85.9
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.2e-30 136.3 92 76.1
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 7.5e-30 133.7 92 73.9
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 9.7e-30 133.3 92 73.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 1.1e-28 129.8 90 73.3
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 5.0e-26 120.9 95 66.3
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 8.5e-26 120.2 92 67.4
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.9e-25 119.0 95 64.2
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 3.2e-25 118.2 92 65.2
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 4.2e-25 117.9 95 64.2
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 4.2e-25 117.9 92 63.0
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 8.8e-23 110.2 94 60.6
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 7.0e-20 100.5 92 57.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 2.1e-16 89.0 94 54.3
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 2.1e-16 89.0 94 45.7
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 3.6e-16 88.2 94 53.2
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 4.7e-16 87.8 93 52.7
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 4.7e-16 87.8 94 53.2
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.8e-15 85.9 94 53.2
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 1.5e-14 82.8 92 47.8
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 3.4e-14 81.6 94 48.9
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 9.8e-14 80.1 94 46.8
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.3e-13 79.7 94 43.6
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.7e-13 79.3 96 43.8
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 8.3e-13 77.0 93 45.2
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.4e-12 76.3 94 42.6
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.8e-12 75.9 92 45.7
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 2.4e-12 75.5 94 41.5
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 3.1e-12 75.1 94 41.5
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.1e-12 75.1 96 41.7
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 4.1e-12 74.7 93 44.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 5.4e-12 74.3 95 40.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 7.0e-12 73.9 90 44.4
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 7.0e-12 73.9 94 45.7
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.0e-11 72.4 92 43.5
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.7e-11 72.0 104 39.4
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.7e-11 72.0 94 44.7
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.5e-11 71.6 92 44.6
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.0e-10 70.1 94 44.7
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 1.0e-10 70.1 92 42.4
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.3e-10 69.7 96 40.6
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.3e-10 69.7 91 44.0
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.3e-10 68.9 97 39.2
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.9e-10 68.6 90 43.3
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 2.9e-10 68.6 92 41.3
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 2.9e-10 68.6 92 41.3
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.8e-10 68.2 89 41.6
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 5.0e-10 67.8 85 47.1
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.6e-10 67.4 93 37.6
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 6.6e-10 67.4 94 40.4
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 6.6e-10 67.4 93 43.0
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.1e-09 66.6 93 45.2
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.5e-09 66.2 94 35.1
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 2.5e-09 65.5 94 35.1
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 2.5e-09 65.5 94 35.1
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.3e-09 64.7 98 38.8
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 4.3e-09 64.7 93 44.1
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 4.3e-09 64.7 93 40.9
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 7.3e-09 63.9 95 38.9
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 7.3e-09 63.9 94 41.5
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 7.3e-09 63.9 94 41.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 7.3e-09 63.9 94 39.4
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 9.5e-09 63.5 99 39.4
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 1.2e-08 63.2 87 42.5
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 1.2e-08 63.2 94 39.4
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.6e-08 62.8 96 39.6
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 2.1e-08 62.4 93 38.7
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 2.1e-08 62.4 93 38.7
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.8e-08 62.0 93 38.7
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 3.6e-08 61.6 93 37.6
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 4.7e-08 61.2 93 37.6
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 8.0e-08 60.5 94 40.4
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 8.0e-08 60.5 92 37.0
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 1.0e-07 60.1 96 39.6
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.0e-07 60.1 97 35.1
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.4e-07 59.7 92 40.2
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.4e-07 59.7 92 38.0
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.4e-07 59.7 93 38.7
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.4e-07 59.7 93 39.8
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 1.4e-07 59.7 93 38.7
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.8e-07 59.3 92 40.2
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 1.8e-07 59.3 93 37.6
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 2.3e-07 58.9 93 38.7
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 2.3e-07 58.9 93 38.7
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 2.3e-07 58.9 93 38.7
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 2.3e-07 58.9 94 37.2
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 2.3e-07 58.9 93 38.7
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 2.3e-07 58.9 94 37.2
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 2.3e-07 58.9 93 38.7
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 2.3e-07 58.9 89 40.4
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 4.0e-07 58.2 90 38.9
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.0e-07 58.2 98 36.7
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 4.0e-07 58.2 90 41.1
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 5.2e-07 57.8 98 36.7
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 6.8e-07 57.4 93 38.7
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 6.8e-07 57.4 92 40.2
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 6.8e-07 57.4 83 36.1
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 8.9e-07 57.0 97 37.1
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 8.9e-07 57.0 98 34.7
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 8.9e-07 57.0 94 35.1
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 8.9e-07 57.0 84 35.7
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.2e-06 56.6 100 34.0
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 1.2e-06 56.6 89 36.0
PSO017G6624 Papaver somniferum HOM05D000831 ORTHO05D000660 1.2e-06 56.6 95 34.7
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.0e-06 55.8 86 37.2
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 3.4e-06 55.1 93 36.6
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 3.4e-06 55.1 93 36.6
Lalb_Chr22g0356331 Lupinus albus HOM05D004838 ORTHO05D005373 4.4e-06 54.7 89 39.3
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 5.7e-06 54.3 93 34.4
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 5.7e-06 54.3 93 34.4
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.7e-06 54.3 101 32.7
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 5.7e-06 54.3 90 36.7
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 7.5e-06 53.9 94 38.3
PSO675G6431 Papaver somniferum HOM05D000831 ORTHO05D000660 7.5e-06 53.9 95 33.7
Glyma.06G298400 Glycine max HOM05D004838 ORTHO05D005373 9.8e-06 53.5 92 40.2


User provided reference genes

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