Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 2.0e-51 205.3 92 100.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.1e-46 189.5 92 90.2
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.3e-45 186.0 90 94.4
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 6.3e-45 183.7 92 88.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.4e-44 182.6 91 86.8
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 2.0e-43 178.7 90 87.8
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 2.0e-43 178.7 90 87.8
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 2.0e-43 178.7 90 87.8
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 2.0e-43 178.7 90 87.8
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 2.6e-43 178.3 90 88.9
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 3.6e-40 167.9 82 89.0
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.4e-39 166.0 82 86.6
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.3e-39 165.2 82 87.8
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 3.9e-39 164.5 82 87.8
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 6.7e-39 163.7 82 89.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 6.7e-39 163.7 82 89.0
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 8.8e-39 163.3 82 87.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.8e-39 163.3 81 87.7
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.8e-39 163.3 81 87.7
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 8.8e-39 163.3 81 87.7
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 8.8e-39 163.3 81 87.7
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.1e-38 162.9 89 80.9
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.5e-38 162.5 82 87.8
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 2.0e-38 162.2 82 86.6
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 4.4e-38 161.0 82 87.8
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 5.7e-38 160.6 79 88.6
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 5.7e-38 160.6 82 84.1
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 5.7e-38 160.6 80 87.5
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 7.4e-38 160.2 86 84.9
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 9.7e-38 159.8 84 85.7
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 9.7e-38 159.8 84 85.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 9.7e-38 159.8 84 85.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 9.7e-38 159.8 84 85.7
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 9.7e-38 159.8 85 83.5
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.3e-37 159.5 82 84.1
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.3e-37 159.5 82 84.1
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 1.7e-37 159.1 82 87.8
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 2.2e-37 158.7 82 87.8
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 2.2e-37 158.7 80 86.2
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 2.2e-37 158.7 82 87.8
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.2e-37 158.7 82 87.8
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.2e-37 158.7 82 87.8
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.7e-37 157.9 84 83.3
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 86.6
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 86.6
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 86.6
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 84.1
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 84.1
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 84.1
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 4.8e-37 157.5 82 84.1
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 6.3e-37 157.1 82 87.8
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 6.3e-37 157.1 82 84.1
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 6.3e-37 157.1 84 79.8
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 6.3e-37 157.1 82 84.1
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 6.3e-37 157.1 79 87.3
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.1e-36 156.4 82 86.6
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.1e-36 156.4 84 83.3
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.1e-36 156.4 85 81.2
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.4e-36 156.0 83 81.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.4e-36 156.0 81 82.7
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.4e-36 156.0 81 82.7
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.4e-36 155.2 82 84.1
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 3.1e-36 154.8 82 82.9
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 4.1e-36 154.5 79 84.8
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 5.3e-36 154.1 82 81.7
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 5.3e-36 154.1 82 81.7
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 7.0e-36 153.7 84 83.3
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 7.0e-36 153.7 82 82.9
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 9.1e-36 153.3 82 81.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 1.2e-35 152.9 80 83.8
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.2e-35 152.9 79 83.5
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 1.2e-35 152.9 78 83.3
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.6e-35 152.5 79 82.3
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.6e-35 152.5 79 83.5
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 2.0e-35 152.1 78 83.3
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 2.0e-35 152.1 83 80.7
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.6e-35 151.8 78 82.1
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.3e-34 149.4 79 81.0
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 1.3e-34 149.4 79 82.3
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 1.3e-34 149.4 79 82.3
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.7e-34 149.1 78 83.3
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 2.2e-34 148.7 79 81.0
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 3.8e-34 147.9 80 80.0
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.8e-34 147.9 79 82.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.1e-33 146.4 79 78.5
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.9e-33 145.6 80 78.8
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 2.5e-33 145.2 88 78.4
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 2.5e-33 145.2 63 100.0
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 4.2e-33 144.4 79 78.5
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 5.5e-33 144.1 82 78.0
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 5.5e-33 144.1 78 82.1
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 9.4e-33 143.3 81 77.8
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.6e-32 142.5 79 79.7
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.1e-32 142.1 103 65.0
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.4e-31 139.4 85 74.1
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.3e-31 138.7 85 75.3
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 3.0e-31 138.3 82 76.8
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 4.0e-31 137.9 85 72.9
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 4.1e-28 127.9 69 79.7
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.1e-25 119.8 61 83.6
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.9e-25 119.0 61 83.6
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 5.5e-25 117.5 62 82.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 4.7e-24 114.4 61 75.4
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 4.1e-20 101.3 52 80.8
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.4e-20 100.9 45 93.3
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.6e-19 99.4 83 56.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.8e-15 85.9 40 95.0
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.5e-14 82.8 58 63.8
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 7.5e-14 80.5 60 56.7
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 2.7e-11 72.0 41 80.5
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.8e-10 68.2 41 73.2
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.6e-10 67.0 41 70.7
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.1e-09 66.6 37 78.4


User provided reference genes

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