Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.1e-99 366.7 185 100.0
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 7.8e-95 350.5 185 95.7
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 7.8e-87 323.9 185 86.5
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.7e-86 322.8 185 86.5
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 6.9e-83 310.8 185 81.1
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.8e-76 288.9 188 78.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.1e-75 285.4 188 77.7
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 9.0e-75 283.9 188 75.0
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.9e-73 278.9 185 72.4
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 2.9e-73 278.9 183 73.2
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.4e-72 275.8 199 69.8
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.2e-72 275.0 199 69.8
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.5e-71 271.9 187 73.3
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.3e-70 269.2 187 73.3
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 5.1e-70 268.1 174 75.3
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.8e-68 261.5 174 73.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.8e-68 261.5 174 73.6
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.8e-67 259.6 188 68.6
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 2.4e-67 259.2 188 68.1
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 2.4e-67 259.2 188 68.1
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.2e-66 256.9 174 73.0
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 2.6e-66 255.8 189 69.3
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 2.6e-66 255.8 189 69.3
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 2.6e-66 255.8 189 69.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 9.9e-66 253.8 189 69.8
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.3e-65 253.4 174 71.8
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.3e-65 253.4 189 67.2
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.7e-65 253.1 189 69.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.9e-65 252.3 189 67.7
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 4.9e-65 251.5 189 65.1
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 6.4e-65 251.1 174 71.3
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.1e-64 250.4 189 66.7
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 1.1e-64 250.4 174 71.3
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.4e-64 250.0 189 69.3
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.4e-64 250.0 189 65.6
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 2.4e-64 249.2 174 71.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 2.4e-64 249.2 189 67.2
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.2e-64 248.8 189 65.1
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 4.2e-64 248.4 174 70.7
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.2e-64 248.4 183 68.9
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.2e-64 248.4 182 69.8
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.2e-64 248.4 182 69.8
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.1e-63 246.1 182 65.4
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.1e-63 246.1 174 69.5
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.7e-63 245.7 189 65.1
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.6e-63 245.0 191 65.4
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.0e-63 244.6 182 68.7
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 7.9e-63 244.2 189 64.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 7.9e-63 244.2 180 65.6
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.0e-62 243.8 182 67.6
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.8e-62 243.0 174 67.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.8e-62 243.0 174 67.2
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.9e-62 241.9 174 69.5
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 3.9e-62 241.9 174 67.2
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 8.7e-62 240.7 177 64.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 8.7e-62 240.7 194 63.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.5e-61 240.0 174 70.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.5e-61 240.0 174 68.4
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.9e-61 239.6 174 66.1
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.5e-61 239.2 174 70.1
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.5e-61 239.2 174 68.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 4.3e-61 238.4 179 66.5
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 5.6e-61 238.0 204 64.7
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.6e-61 238.0 185 64.9
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.6e-60 236.5 184 63.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.1e-60 236.1 174 66.7
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.1e-60 236.1 174 68.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 4.8e-60 235.0 174 66.1
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.8e-60 235.0 185 62.7
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.8e-60 235.0 174 69.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 6.2e-60 234.6 189 63.5
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 6.2e-60 234.6 179 63.7
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 6.2e-60 234.6 177 65.5
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 8.1e-60 234.2 174 69.0
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.4e-59 233.4 174 65.5
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.8e-59 233.0 174 65.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.8e-59 233.0 175 67.4
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 6.9e-59 231.1 185 63.2
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 9.0e-59 230.7 174 64.4
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.2e-58 230.3 196 61.7
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.2e-57 226.1 174 64.4
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 2.2e-57 226.1 179 63.7
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.5e-56 222.6 174 63.2
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.5e-56 222.6 174 62.6
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 3.2e-56 222.2 174 62.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 3.2e-56 222.2 174 62.6
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 3.2e-56 222.2 169 63.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 4.2e-56 221.9 185 60.5
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.0e-54 217.2 184 59.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.0e-54 217.2 174 61.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.3e-54 216.9 184 59.8
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.9e-54 215.3 152 69.1
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 5.1e-54 214.9 177 60.5
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 6.7e-54 214.5 193 58.0
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 8.2e-52 207.6 270 44.4
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.4e-51 206.8 159 64.8
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 3.1e-51 205.7 196 54.6
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.7e-49 199.9 192 53.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.5e-48 196.1 181 54.1
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.5e-48 194.9 174 58.0
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 6.1e-47 191.4 192 52.6
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.0e-46 190.7 174 54.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.9e-46 188.7 170 53.5
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 6.7e-46 188.0 174 54.0
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.1e-45 187.2 192 52.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.3e-45 185.3 174 55.2
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 3.7e-44 182.2 157 59.2
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-43 180.6 163 57.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.4e-43 180.3 174 55.2
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 5.3e-43 178.3 174 55.2
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.0e-41 174.1 174 54.0
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 2.2e-41 172.9 207 49.3
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.9e-41 172.6 174 53.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.9e-41 172.6 174 53.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.9e-41 172.6 174 53.4
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 3.8e-41 172.2 186 53.2
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 6.5e-41 171.4 186 52.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 6.5e-41 171.4 186 52.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.5e-40 169.5 170 57.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.2e-40 169.1 174 55.2
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 3.7e-36 155.6 141 58.2
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.9e-33 146.0 186 48.9
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.4e-32 143.7 155 54.8
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.9e-30 135.6 106 65.1
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 5.9e-26 121.7 74 78.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.0e-25 118.6 101 60.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.4e-19 100.5 82 57.3
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-17 93.6 79 55.7
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 2.2e-17 93.2 155 36.8
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.9e-17 92.8 61 73.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 3.8e-17 92.4 86 59.3
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 8.5e-17 91.3 72 65.3
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.1e-16 90.9 159 34.6
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.6e-15 87.0 119 37.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 6.1e-15 85.1 67 64.2
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.4e-14 84.0 68 57.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.3e-14 83.2 67 58.2
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.0e-14 82.4 68 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 5.2e-14 82.0 150 34.7
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 7.5e-13 78.2 94 47.9
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.5e-10 69.3 91 48.4
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.0e-09 65.5 66 56.1
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 1.4e-06 57.4 43 60.5


User provided reference genes

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