Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g086960 Medicago truncatula HOM05D000743 ORTHO05D000580 2.1e-22 108.2 57 100.0
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 4.8e-11 70.5 43 81.4
Ah.10g028530 Amaranthus hybridus HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Aqoxy4G01617 Aquilegia oxysepala HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
EL10Ac5g11445 Beta vulgaris HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
CANSAT16G0054 Cannabis sativa HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
AUR62042354 Chenopodium quinoa HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
AUR62043788 Chenopodium quinoa HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
AUR62043917 Chenopodium quinoa HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
DCAR_016773 Daucus carota HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Gorai.001G167100 Gossypium raimondii HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Gorai.013G213000 Gossypium raimondii HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Hma1.2p1_0547F.1_g176650 Hydrangea macrophylla HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Lj2C1236T50 Lonicera japonica HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Lj2P1232T89 Lonicera japonica HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
LjContig00439g0018024 Lotus japonicus HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Lalb_Chr00c29g0408021 Lupinus albus HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Lalb_Chr01g0011011 Lupinus albus HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Nn003s41390 Nelumbo nucifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Nn044s41816 Nelumbo nucifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Nn1g09935 Nelumbo nucifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Nn1g10007 Nelumbo nucifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Nn1g10146 Nelumbo nucifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Psat7g093400 Pisum sativum HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Potri.007G062242 Populus trichocarpa HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
PGR028G0002 Punica granatum HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
QL06p018440 Quercus lobata HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
RhsimMtG0007400 Rhododendron simsii HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SalBow1G7966 Salvia bowleyana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI34999 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI38215 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI40905 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI44331 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI45577 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI46361 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI49632 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SHI50288 Sapria himalayana HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Sc11g0004370 Simmondsia chinensis HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Solyc00g500345.1 Solanum lycopersicum HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Solyc00g500358.1 Solanum lycopersicum HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
SGA_v2.0_scaffold400G50835 Striga asiatica HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
Thecc.02G216100 Theobroma cacao HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
TAR477G0001 Trochodendron aralioides HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
unitig_87.g27985 Utricularia gibba HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
GSVIVG01002448001 Vitis vinifera HOM05D000743 ORTHO05D000580 8.2e-11 69.7 41 85.4
arahy.Tifrunner.gnm1.ann1.4E2K1J Arachis hypogaea HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
arahy.Tifrunner.gnm1.ann1.4R8S2X Arachis hypogaea HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
arahy.Tifrunner.gnm1.ann1.NM4EZ4 Arachis hypogaea HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
arahy.Tifrunner.gnm1.ann1.YBNI57 Arachis hypogaea HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
ECA039G0013 Erigeron canadensis HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
FvH4_2g28400 Fragaria vesca HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
HanXRQChr00c0055g0571381 Helianthus annuus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
HanXRQMTg0579551 Helianthus annuus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_0_17620 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_0_38060 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_1_2921 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_5_148960 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_5_181820 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Lsat_1_v5_gn_9_53101 Lactuca sativa HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
SHI39780 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund03871 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund12892 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund28637 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund28902 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund29815 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
Hund30932 Selenicereus undatus HOM05D000743 ORTHO05D000580 1.4e-10 68.9 41 82.9
AUR62026822 Chenopodium quinoa HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb434640 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb436190 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb436240 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb436300 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb436340 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb436480 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb437040 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb437490 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb437510 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb441850 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb442490 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb442780 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
Zm00001eb442880 Zea mays HOM05D000743 ORTHO05D000580 1.8e-10 68.6 41 82.9
CAN.G547.9 Capsicum annuum HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
AUR62034209 Chenopodium quinoa HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
ClCG08G000370 Citrullus lanatus HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
CsaV3_5G020400 Cucumis sativus L. HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
CsaV3_UNG210320 Cucumis sativus L. HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
Dinv02153 Davidia involucrata HOM05D000743 ORTHO05D000580 2.4e-10 68.2 41 82.9
Dinv06721 Davidia involucrata HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 80.5
HanXRQChr01g0003491 Helianthus annuus HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 80.5
SabraMtG0010000 Salix brachista HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 4.1e-10 67.4 41 82.9
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
SHI36974 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
SHI38845 Sapria himalayana HOM05D000743 ORTHO05D000580 4.1e-10 67.4 41 82.9
CDE02G1641 Ceratophyllum demersum HOM05D000743 ORTHO05D000580 5.3e-10 67.0 41 82.9
CDE02G3004 Ceratophyllum demersum HOM05D000743 ORTHO05D000580 5.3e-10 67.0 41 82.9
ECA238G4293 Erigeron canadensis HOM05D000743 ORTHO05D000580 5.3e-10 67.0 35 94.3
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 5.3e-10 67.0 35 97.1
CsaV3_5G017040 Cucumis sativus L. HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 80.5
HanXRQChr01g0013361 Helianthus annuus HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 80.5
HanXRQChr10g0297131 Helianthus annuus HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 80.5
Lsat_1_v5_gn_8_134580 Lactuca sativa HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 78.0
RcHm_v2.0_MTg0498251 Rosa chinensis HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 78.0
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 6.9e-10 66.6 41 80.5
Aa31sc2803G10 Aethionema arabicum HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
AL3G48830 Arabidopsis lyrata HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
AT2G07698 Arabidopsis thaliana HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
ATMG01190 Arabidopsis thaliana HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
BcaC05g26872 Brassica carinata HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
BNapus_Darmor_BZH_scaffold_234p00150 Brassica napus HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
BolC4t23499H Brassica oleracea HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
BolSC28t60351H Brassica oleracea HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
BraSC77t46655Z Brassica rapa HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
CARHR283420 Cardamine hirsuta HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
Gohir.D06G053900 Gossypium hirsutum HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 82.9
Sp3g25910 Schrenkiella parvula HOM05D000743 ORTHO05D000580 9.1e-10 66.2 41 80.5
Nitab4.5_0000513g0140 Nicotiana tabacum HOM05D000743 ORTHO05D000580 1.2e-09 65.9 41 80.5
SHI35456 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-09 65.9 41 80.5
SHI48648 Sapria himalayana HOM05D000743 ORTHO05D000580 1.5e-09 65.5 41 80.5
SHI39989 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-09 65.1 41 80.5
SHI47631 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-09 65.1 35 94.3
SHI47781 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-09 65.1 35 94.3
Lsat_1_v5_gn_0_43360 Lactuca sativa HOM05D000743 ORTHO05D000580 2.6e-09 64.7 41 80.5
Psat0s2778g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.6e-09 64.7 41 80.5
SHI35290 Sapria himalayana HOM05D000743 ORTHO05D000580 2.6e-09 64.7 40 82.5
SHI37167 Sapria himalayana HOM05D000743 ORTHO05D000580 2.6e-09 64.7 34 97.1
SHI37853 Sapria himalayana HOM05D000743 ORTHO05D000580 2.6e-09 64.7 41 78.0
SHI39077 Sapria himalayana HOM05D000743 ORTHO05D000580 2.6e-09 64.7 41 78.0
Psat4g185640 Pisum sativum HOM05D000743 ORTHO05D000580 3.4e-09 64.3 40 80.0
SHI37066 Sapria himalayana HOM05D000743 ORTHO05D000580 3.4e-09 64.3 41 80.5
QL11p017578 Quercus lobata HOM05D000743 ORTHO05D000580 4.5e-09 63.9 41 78.0
SHI35186 Sapria himalayana HOM05D000743 ORTHO05D000580 4.5e-09 63.9 41 80.5
SHI35236 Sapria himalayana HOM05D000743 ORTHO05D000580 4.5e-09 63.9 41 78.0
SHI34994 Sapria himalayana HOM05D000743 ORTHO05D000580 5.9e-09 63.5 35 94.3
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 5.9e-09 63.5 41 78.0
BcaC04g22618 Brassica carinata HOM05D000743 ORTHO05D000580 7.7e-09 63.2 40 77.5
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 7.7e-09 63.2 41 75.6
Nitab4.5_0001170g0170 Nicotiana tabacum HOM05D000743 ORTHO05D000580 1.0e-08 62.8 40 77.5
SHI35453 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-08 62.8 32 96.9
SHI36077 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-08 62.8 41 73.2
SHI43453 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-08 62.8 35 94.3
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-08 62.4 35 91.4
Nitab4.5_0002326g0020 Nicotiana tabacum HOM05D000743 ORTHO05D000580 1.7e-08 62.0 41 75.6
SHI37137 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-08 62.0 43 72.1
SHI37900 Sapria himalayana HOM05D001560 ORTHO05D003613 1.7e-08 62.0 43 72.1
SHI38563 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-08 62.0 41 78.0
SHI38586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.7e-08 62.0 41 78.0
BcaC08g43718 Brassica carinata HOM05D000743 ORTHO05D000580 2.9e-08 61.2 41 75.6
CARHR287200 Cardamine hirsuta HOM05D000743 ORTHO05D000580 2.9e-08 61.2 44 72.7
Nitab4.5_0006085g0040 Nicotiana tabacum HOM05D000743 ORTHO05D000580 3.8e-08 60.8 35 88.6
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-08 60.8 46 69.6
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-08 60.8 40 77.5
Lsat_1_v5_gn_8_151041 Lactuca sativa HOM05D000743 ORTHO05D000580 5.0e-08 60.5 35 88.6
PRCOL_00002269 Prasinoderma coloniale HOM05D000743 ORTHO05D000580 5.0e-08 60.5 41 68.3
SHI36137 Sapria himalayana HOM05D000743 ORTHO05D000580 5.0e-08 60.5 31 93.5
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 5.0e-08 60.5 41 73.2
SHI52852 Sapria himalayana HOM05D000743 ORTHO05D000580 5.0e-08 60.5 41 75.6
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 6.5e-08 60.1 41 75.6
C04p19640 Brassica napus HOM05D000743 ORTHO05D000580 8.5e-08 59.7 39 76.9
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 8.5e-08 59.7 41 73.2
SHI27344 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-07 58.9 41 73.2
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-07 58.9 39 79.5
SHI50162 Sapria himalayana HOM05D000743 ORTHO05D000580 1.4e-07 58.9 41 70.7
MCO10G241 Micromonas commoda HOM05D000743 ORTHO05D000580 1.9e-07 58.5 41 63.4
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 1.9e-07 58.5 31 90.3
SHI39479 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-07 58.5 32 90.6
SHI42053 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-07 58.5 35 82.9
SHI41243 Sapria himalayana HOM05D000743 ORTHO05D000580 4.2e-07 57.4 41 73.2
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 4.2e-07 57.4 30 93.3
SHI40316 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-06 55.8 31 87.1
Nitab4.5_0001788g0060 Nicotiana tabacum HOM05D000743 ORTHO05D000580 2.7e-06 54.7 31 90.3
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 2.7e-06 54.7 32 93.8
Cre02.g116750 Chlamydomonas reinhardtii HOM05D000743 ORTHO05D000580 3.6e-06 54.3 41 58.5
Gorai.006G029500 Gossypium raimondii HOM05D000743 ORTHO05D000580 3.6e-06 54.3 35 80.0
SHI35978 Sapria himalayana HOM05D000743 ORTHO05D000580 3.6e-06 54.3 31 87.1
SHI38480 Sapria himalayana HOM05D000743 ORTHO05D000580 4.7e-06 53.9 32 81.2
Ah.04g161620 Amaranthus hybridus HOM05D000743 ORTHO05D023398 6.1e-06 53.5 35 80.0
RcHm_v2.0_Chr5g0029961 Rosa chinensis HOM05D000743 ORTHO05D000580 6.1e-06 53.5 27 92.6
Nitab4.5_0001152g0650 Nicotiana tabacum HOM05D000743 ORTHO05D000580 7.9e-06 53.1 31 83.9


User provided reference genes

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