Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 4.9e-170 601.7 469 100.0
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 1.1e-121 441.0 470 78.3
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 2.2e-101 373.6 489 76.3
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 3.4e-94 349.7 466 73.8
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 3.3e-89 333.2 477 71.9
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 2.3e-82 310.5 470 70.6
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 2.0e-78 297.4 486 61.5
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 6.2e-72 275.8 491 62.5
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 2.0e-62 244.2 474 62.9
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 7.3e-57 225.7 265 52.5
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 1.6e-56 224.6 489 61.8
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 3.4e-54 216.9 497 50.9
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.1e-39 168.7 499 54.1
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.4e-36 158.3 501 43.7
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 2.7e-35 154.1 523 54.3
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.8e-34 151.4 481 56.3
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 6.7e-34 149.4 519 53.8
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.5e-33 148.3 525 53.3
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.5e-33 147.5 488 56.1
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.3e-33 146.7 481 56.3
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 9.7e-33 145.6 475 55.4
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 9.7e-33 145.6 477 53.7
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.3e-32 145.2 469 54.2
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-32 144.8 486 56.2
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.3e-32 142.9 478 54.2
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 8.2e-32 142.5 482 48.5
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.4e-31 141.7 499 53.5
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.8e-31 141.4 492 46.7
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 2.4e-31 141.0 472 55.5
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 9.0e-31 139.0 482 47.9
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.5e-30 138.3 445 54.4
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 3.4e-30 137.1 441 56.0
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 3.4e-30 137.1 492 52.6
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 3.4e-30 137.1 475 48.6
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 7.2e-28 129.4 264 38.3
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 7.2e-28 129.4 491 53.2
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.2e-27 128.6 472 53.8
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 1.6e-27 128.3 499 49.9
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 2.7e-27 127.5 500 46.2
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.7e-26 122.9 484 43.0
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 2.5e-25 120.9 487 41.1
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 4.3e-25 120.2 505 45.7
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 5.7e-25 119.8 486 51.0
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 9.7e-25 119.0 275 35.3
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.3e-24 118.6 274 35.0
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 2.2e-24 117.9 488 51.0
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 2.8e-24 117.5 268 37.3
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.8e-24 117.5 287 35.2
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 4.8e-24 116.7 474 47.3
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 1.1e-23 115.5 505 39.6
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.1e-23 115.5 267 33.7
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.4e-23 115.2 555 45.2
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 3.1e-23 114.0 466 55.6
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 6.9e-23 112.8 481 52.4
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 9.1e-23 112.5 309 32.0
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.2e-22 112.1 480 54.0
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 2.6e-22 110.9 461 55.3
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 3.4e-22 110.5 490 50.6
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 4.5e-22 110.2 470 53.4
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 1.7e-21 108.2 471 48.6
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 2.9e-21 107.5 489 42.9
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 3.8e-21 107.1 475 52.2
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.9e-20 104.8 279 33.7
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 2.5e-20 104.4 493 48.9
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 3.2e-20 104.0 267 33.0
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 9.4e-20 102.4 282 32.3
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 2.7e-19 100.9 352 48.3
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.3e-18 97.8 476 34.9
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 8.8e-18 95.9 474 39.5
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 2.0e-17 94.7 289 32.2
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 2.0e-17 94.7 471 52.7
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.6e-17 94.4 505 38.4
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 2.6e-17 94.4 67 67.2
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.3e-16 92.0 475 42.3
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 1.7e-16 91.7 493 46.7
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 3.7e-16 90.5 472 44.7
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 6.3e-16 89.7 482 33.8
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.1e-15 89.0 488 49.4
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 1.4e-15 88.6 473 45.5
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.8e-15 88.2 486 51.4
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 3.1e-15 87.4 474 36.7
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 7.0e-15 86.3 276 34.1
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 2.0e-14 84.7 501 49.3
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 3.5e-14 84.0 288 30.2
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 5.0e-13 80.1 273 50.2
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 1.1e-12 79.0 182 37.4
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.1e-11 74.7 67 50.7
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 6.1e-11 73.2 268 29.5
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 4.0e-10 70.5 60 58.3
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 5.2e-10 70.1 77 48.1
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 5.7e-09 66.6 267 30.7
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 2.2e-08 64.7 471 50.1
arahy.Tifrunner.gnm1.ann1.28YW2N Arachis hypogaea HOM05D033635 ORTHO05D031606 4.8e-08 63.5 34 85.3
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 6.3e-08 63.2 56 48.2
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 6.3e-08 63.2 268 29.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 8.2e-08 62.8 97 45.4
arahy.Tifrunner.gnm1.ann1.BG32VG Arachis hypogaea HOM05D033635 ORTHO05D031606 1.4e-07 62.0 36 77.8
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.4e-07 62.0 369 59.1
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 2.4e-07 61.2 273 28.9
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 3.1e-07 60.8 74 43.2
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 5.3e-07 60.1 190 34.7
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 7.0e-07 59.7 413 50.6
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 9.1e-07 59.3 269 28.6
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 2.7e-06 57.8 261 28.0
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 2.7e-06 57.8 269 28.3
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 5.9e-06 56.6 265 27.5


User provided reference genes

Program Settings