Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g086480 Medicago truncatula HOM05D002971 ORTHO05D036715 5.6e-106 388.3 306 100.0
Psat5g257360 Pisum sativum HOM05D002971 ORTHO05D003358 1.7e-41 174.1 143 69.2
TPR.G34930 Trifolium pratense HOM05D002971 ORTHO05D003358 1.9e-37 160.6 140 70.0
Ca_01661_v3 Cicer arietinum L. HOM05D002971 ORTHO05D003358 2.5e-37 160.2 146 62.3
Medtr4g115590 Medicago truncatula HOM05D002971 ORTHO05D036715 4.5e-23 112.8 61 88.5
Lj3g0006810 Lotus japonicus HOM05D002971 ORTHO05D003358 1.2e-20 104.8 106 54.7
Glyma.13G316500 Glycine max HOM05D002971 ORTHO05D003358 1.2e-18 98.2 145 49.0
arahy.Tifrunner.gnm1.ann1.T13AP3 Arachis hypogaea HOM05D002971 ORTHO05D003358 5.7e-18 95.9 138 44.9
Glyma.12G184800 Glycine max HOM05D002971 ORTHO05D003358 9.1e-16 88.6 145 46.2
Lalb_Chr14g0376051 Lupinus albus HOM05D002971 ORTHO05D003358 2.7e-15 87.0 127 49.6
Medtr3g009390 Medicago truncatula HOM05D002971 ORTHO05D036715 2.5e-13 80.5 57 77.2
Phvul.005G123800 Phaseolus vulgaris HOM05D002971 ORTHO05D003358 9.5e-13 78.6 108 50.9
VMungo1080G0297 Vigna mungo HOM05D002971 ORTHO05D003358 2.3e-11 73.9 127 45.7
Potri.004G203000 Populus trichocarpa HOM05D002971 ORTHO05D003358 8.9e-11 72.0 132 37.1
Duzib168G2399 Durio zibethinus HOM05D002971 ORTHO05D003358 1.5e-10 71.2 79 45.6
Hma1.2p1_0578F.1_g182490 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 2.0e-10 70.9 72 45.8
Duzib150G0794 Durio zibethinus HOM05D002971 ORTHO05D003358 3.4e-10 70.1 70 51.4
COL.COLO4_19881 Corchorus olitorius HOM05D002971 ORTHO05D003358 7.5e-10 68.9 76 47.4
Dinv29481 Davidia involucrata HOM05D002971 ORTHO05D003358 7.5e-10 68.9 122 36.9
Gohir.A05G081100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 7.5e-10 68.9 73 50.7
Gohir.D05G084100 Gossypium hirsutum HOM05D002971 ORTHO05D003358 7.5e-10 68.9 73 50.7
Gorai.009G085900 Gossypium raimondii HOM05D002971 ORTHO05D003358 7.5e-10 68.9 73 50.7
Os02g0532800 Oryza sativa ssp. japonica HOM05D002971 ORTHO05D003358 7.5e-10 68.9 81 48.1
Thecc.09G283900 Theobroma cacao HOM05D002971 ORTHO05D003358 1.3e-09 68.2 76 46.1
AL5G22550 Arabidopsis lyrata HOM05D002971 ORTHO05D003358 1.7e-09 67.8 80 48.8
A06p26890 Brassica napus HOM05D002971 ORTHO05D003358 1.7e-09 67.8 80 48.8
Potri.004G202900 Populus trichocarpa HOM05D002971 ORTHO05D003358 1.7e-09 67.8 71 50.7
CANSAT54G2951 Cannabis sativa HOM05D002971 ORTHO05D003358 2.9e-09 67.0 64 51.6
AT3G44450 Arabidopsis thaliana HOM05D002971 ORTHO05D003358 3.7e-09 66.6 80 47.5
Zm00001eb242760 Zea mays HOM05D002971 ORTHO05D003358 3.7e-09 66.6 79 48.1
BraA06t25624Z Brassica rapa HOM05D002971 ORTHO05D003358 4.9e-09 66.2 80 48.8
ClCG02G022130 Citrullus lanatus HOM05D002971 ORTHO05D003358 4.9e-09 66.2 87 43.7
Sed0027558 Sechium edule HOM05D002971 ORTHO05D003358 6.3e-09 65.9 64 54.7
CsaV3_6G014970 Cucumis sativus L. HOM05D002971 ORTHO05D003358 1.1e-08 65.1 87 42.5
Thhalv10011075m.g Eutrema salsugineum HOM05D002971 ORTHO05D003358 1.1e-08 65.1 77 49.4
Oeu039078.1 Olea europaea HOM05D002971 ORTHO05D003358 1.1e-08 65.1 82 47.6
TWI79G0898 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 1.1e-08 65.1 88 45.5
MELO3C021428.2 Cucumis melo HOM05D002971 ORTHO05D003358 1.4e-08 64.7 64 51.6
Potri.009G164000 Populus trichocarpa HOM05D002971 ORTHO05D003358 1.4e-08 64.7 91 45.1
Prupe.6G129600 Prunus persica HOM05D002971 ORTHO05D003358 1.4e-08 64.7 63 49.2
Sp5g16790 Schrenkiella parvula HOM05D002971 ORTHO05D003358 1.4e-08 64.7 80 50.0
Eucgr.B03851 Eucalyptus grandis HOM05D002971 ORTHO05D003358 1.8e-08 64.3 64 50.0
BcaB02g10753 Brassica carinata HOM05D002971 ORTHO05D003358 2.4e-08 63.9 60 56.7
Manes.11G161700 Manihot esculenta HOM05D002971 ORTHO05D003358 2.4e-08 63.9 69 50.7
Potri.009G163900 Populus trichocarpa HOM05D002971 ORTHO05D003358 3.2e-08 63.5 73 47.9
Thhalv10010806m.g Eutrema salsugineum HOM05D002971 ORTHO05D003358 4.1e-08 63.2 106 40.6
CARHR104470 Cardamine hirsuta HOM05D002971 ORTHO05D003358 5.4e-08 62.8 60 55.0
Dinv21212 Davidia involucrata HOM05D002971 ORTHO05D003358 5.4e-08 62.8 74 45.9
Migut.J01042 Erythranthe guttata HOM05D002971 ORTHO05D003358 5.4e-08 62.8 105 37.1
Sed0013825 Sechium edule HOM05D002971 ORTHO05D003358 5.4e-08 62.8 74 47.3
FvH4_3g24891 Fragaria vesca HOM05D002971 ORTHO05D003358 9.2e-08 62.0 64 50.0
FAN11G0501 Fragaria x ananassa HOM05D002971 ORTHO05D003358 9.2e-08 62.0 64 50.0
FvH4_6g18630 Fragaria vesca HOM05D002971 ORTHO05D003358 1.2e-07 61.6 74 45.9
MD00G1073200 Malus domestica HOM05D002971 ORTHO05D003358 1.2e-07 61.6 63 49.2
FAN21G3923 Fragaria x ananassa HOM05D002971 ORTHO05D003358 1.6e-07 61.2 64 48.4
Carub.0005s1012 Capsella rubella HOM05D002971 ORTHO05D003358 2.0e-07 60.8 115 39.1
FAN02G2601 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.0e-07 60.8 74 44.6
FAN05G3027 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.0e-07 60.8 74 44.6
FAN05G5184 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.0e-07 60.8 74 44.6
Cc06_g05710 Coffea canephora HOM05D002971 ORTHO05D003358 2.7e-07 60.5 71 40.8
FAN16G2298 Fragaria x ananassa HOM05D002971 ORTHO05D003358 2.7e-07 60.5 64 48.4
Hma1.2p1_0232F.1_g097870 Hydrangea macrophylla HOM05D002971 ORTHO05D003358 2.7e-07 60.5 76 44.7
Manes.09G055700 Manihot esculenta HOM05D002971 ORTHO05D003358 2.7e-07 60.5 67 47.8
PSO339G3111 Papaver somniferum HOM05D002971 ORTHO05D003358 3.5e-07 60.1 67 47.8
PSO384G0091 Papaver somniferum HOM05D002971 ORTHO05D003358 3.5e-07 60.1 67 47.8
Lalb_Chr01g0018161 Lupinus albus HOM05D002971 ORTHO05D003358 4.6e-07 59.7 67 52.2
RcHm_v2.0_Chr5g0044531 Rosa chinensis HOM05D002971 ORTHO05D003358 4.6e-07 59.7 62 50.0
VMungo1383G3159 Vigna mungo HOM05D002971 ORTHO05D003358 4.6e-07 59.7 93 40.9
AL5G33500 Arabidopsis lyrata HOM05D002971 ORTHO05D003358 5.9e-07 59.3 86 44.2
Glyma.13G153400 Glycine max HOM05D002971 ORTHO05D003358 5.9e-07 59.3 71 46.5
MD03G1143800 Malus domestica HOM05D002971 ORTHO05D003358 5.9e-07 59.3 62 48.4
THA.LOC104810919 Tarenaya hassleriana HOM05D002971 ORTHO05D003358 5.9e-07 59.3 109 34.9
MSTRG.26640 Avicennia marina HOM05D002971 ORTHO05D003358 7.8e-07 58.9 74 45.9
BcaB01g00345 Brassica carinata HOM05D002971 ORTHO05D003358 7.8e-07 58.9 97 39.2
A04p06720 Brassica napus HOM05D002971 ORTHO05D003358 7.8e-07 58.9 113 37.2
BraA04t16376Z Brassica rapa HOM05D002971 ORTHO05D003358 7.8e-07 58.9 113 37.2
SGA_v2.0_scaffold13G06720 Striga asiatica HOM05D002971 ORTHO05D003358 7.8e-07 58.9 83 41.0
Atru.chr3.3250 Acer truncatum HOM05D002971 ORTHO05D003358 1.0e-06 58.5 86 41.9
BcaB02g08556 Brassica carinata HOM05D002971 ORTHO05D003358 1.0e-06 58.5 86 41.9
ClCG10G019000 Citrullus lanatus HOM05D002971 ORTHO05D003358 1.0e-06 58.5 93 39.8
FAN14G2272 Fragaria x ananassa HOM05D002971 ORTHO05D003358 1.0e-06 58.5 74 44.6
unitig_578.g16374 Utricularia gibba HOM05D002971 ORTHO05D003358 1.0e-06 58.5 81 40.7
Sabra09G0128200 Salix brachista HOM05D002971 ORTHO05D003358 1.3e-06 58.2 71 42.3
TAR633G0958 Trochodendron aralioides HOM05D002971 ORTHO05D003358 1.3e-06 58.2 63 47.6
Lj2C136T9 Lonicera japonica HOM05D002971 ORTHO05D003358 1.7e-06 57.8 98 42.9
Aa31LG4G13910 Aethionema arabicum HOM05D002971 ORTHO05D003358 2.3e-06 57.4 82 46.3
Medtr1g059990 Medicago truncatula HOM05D002971 ORTHO05D003358 2.3e-06 57.4 99 40.4
PSO384G1229 Papaver somniferum HOM05D002971 ORTHO05D003358 2.3e-06 57.4 69 43.5
MD14G1022500 Malus domestica HOM05D002971 ORTHO05D003358 2.9e-06 57.0 70 42.9
Actinidia05434 Actinidia chinensis HOM05D002971 ORTHO05D003358 3.9e-06 56.6 65 46.2
arahy.Tifrunner.gnm1.ann1.2VK3FY Arachis hypogaea HOM05D002971 ORTHO05D003358 3.9e-06 56.6 75 46.7
CANSAT78G1472 Cannabis sativa HOM05D002971 ORTHO05D003358 3.9e-06 56.6 69 43.5
COL.COLO4_29740 Corchorus olitorius HOM05D002971 ORTHO05D003358 3.9e-06 56.6 87 42.5
ECA247G2832 Erigeron canadensis HOM05D002971 ORTHO05D003358 3.9e-06 56.6 68 42.6
MD12G1035800 Malus domestica HOM05D002971 ORTHO05D003358 3.9e-06 56.6 70 41.4
PGR004G2629 Punica granatum HOM05D002971 ORTHO05D003358 3.9e-06 56.6 72 43.1
QL01p012303 Quercus lobata HOM05D002971 ORTHO05D003358 3.9e-06 56.6 128 36.7
Sed0010508 Sechium edule HOM05D002971 ORTHO05D003358 3.9e-06 56.6 115 35.7
Carub.0005s1919 Capsella rubella HOM05D002971 ORTHO05D003358 5.0e-06 56.2 96 41.7
Glyma.19G194900 Glycine max HOM05D002971 ORTHO05D003358 5.0e-06 56.2 70 41.4
HanXRQChr05g0133241 Helianthus annuus HOM05D002971 ORTHO05D003358 5.0e-06 56.2 76 43.4
Lsat_1_v5_gn_8_77040 Lactuca sativa HOM05D002971 ORTHO05D003358 5.0e-06 56.2 63 46.0
Nn6g34905 Nelumbo nucifera HOM05D002971 ORTHO05D003358 5.0e-06 56.2 67 46.3
Peaxi162Scf00003g00510 Petunia axillaris HOM05D002971 ORTHO05D003358 5.0e-06 56.2 65 44.6
TWI74G0300 Tripterygium wilfordii HOM05D002971 ORTHO05D003358 5.0e-06 56.2 67 44.8
Aqoxy4G02781 Aquilegia oxysepala HOM05D002971 ORTHO05D003358 6.6e-06 55.8 76 39.5
BcaB02g07819 Brassica carinata HOM05D002971 ORTHO05D003358 6.6e-06 55.8 84 42.9
Lj2C136T8 Lonicera japonica HOM05D002971 ORTHO05D003358 6.6e-06 55.8 98 43.9
Medtr4g461050 Medicago truncatula HOM05D000002 ORTHO05D000047 6.6e-06 55.8 36 77.8
Nn2g14154 Nelumbo nucifera HOM05D002971 ORTHO05D003358 6.6e-06 55.8 72 43.1
TPR.G19528 Trifolium pratense HOM05D002971 ORTHO05D003358 6.6e-06 55.8 98 40.8
Ciclev10012842m.g Citrus clementina HOM05D002971 ORTHO05D003358 8.6e-06 55.5 66 45.5
DCAR_009161 Daucus carota HOM05D002971 ORTHO05D003358 8.6e-06 55.5 60 48.3
HanXRQChr08g0229911 Helianthus annuus HOM05D002971 ORTHO05D003358 8.6e-06 55.5 65 44.6
Lj1g0014395 Lotus japonicus HOM05D002971 ORTHO05D003358 8.6e-06 55.5 72 40.3
Manes.04G003600 Manihot esculenta HOM05D002971 ORTHO05D003358 8.6e-06 55.5 65 47.7
Psat6g081160 Pisum sativum HOM05D002971 ORTHO05D003358 8.6e-06 55.5 96 38.5
Sed0008713 Sechium edule HOM05D002971 ORTHO05D003358 8.6e-06 55.5 85 41.2
Solyc11g068390.1 Solanum lycopersicum HOM05D002971 ORTHO05D003358 8.6e-06 55.5 61 49.2


User provided reference genes

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