Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 0.0e+00 1656.7 844 100.0
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 0.0e+00 1164.8 851 68.9
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 0.0e+00 1153.3 791 73.8
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 0.0e+00 1104.4 842 67.2
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 6.3e-301 1037.3 803 65.1
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 8.3e-301 1036.9 819 64.6
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 5.9e-291 1004.2 792 65.0
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 4.2e-289 998.0 807 63.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 2.1e-272 942.6 802 62.0
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.1e-271 940.3 892 55.9
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 1.4e-271 939.9 813 59.9
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 4.4e-270 934.9 891 55.3
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 2.3e-263 912.5 793 59.5
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 1.5e-262 909.8 801 59.3
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 7.3e-257 891.0 796 58.5
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 1.8e-255 886.3 807 57.9
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 7.6e-254 880.9 779 58.4
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 9.9e-254 880.6 794 57.8
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 5.4e-252 874.8 799 57.7
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.3e-252 874.0 782 58.6
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.1e-251 872.8 786 58.4
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 2.7e-251 872.5 782 57.9
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 3.0e-250 869.0 785 57.6
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 1.9e-249 866.3 790 56.7
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 4.3e-249 865.1 797 56.8
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 2.4e-244 849.4 769 57.2
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 2.7e-243 845.9 742 57.7
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.3e-242 843.6 799 56.4
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.3e-242 842.8 807 55.8
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 2.3e-242 842.8 742 57.7
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 6.6e-242 841.3 796 56.2
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 1.9e-241 839.7 791 55.5
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 1.3e-240 837.0 780 55.6
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 1.3e-240 837.0 779 55.3
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 2.8e-240 835.9 780 56.5
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 3.6e-240 835.5 728 58.4
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.4e-239 833.6 801 55.2
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.4e-239 833.6 738 56.6
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 3.1e-239 832.4 800 55.1
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 4.9e-237 825.1 757 56.3
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 4.9e-237 825.1 748 57.0
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 8.4e-237 824.3 814 53.4
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 1.9e-236 823.2 745 56.8
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 3.5e-235 818.9 778 55.8
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 6.0e-235 818.1 797 54.8
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.8e-234 816.6 797 54.8
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 6.7e-234 814.7 743 56.5
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 8.1e-232 807.7 720 57.8
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 1.8e-231 806.6 723 56.6
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 2.6e-230 802.7 803 52.8
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 1.3e-229 800.4 796 52.6
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 4.9e-229 798.5 776 56.6
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 1.1e-228 797.3 805 52.2
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.9e-228 796.6 759 54.7
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 5.5e-228 795.0 661 59.8
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 3.0e-226 789.3 792 52.5
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 5.1e-226 788.5 829 51.1
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 1.1e-225 787.3 583 63.3
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 1.1e-225 787.3 706 57.6
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 1.9e-225 786.6 807 51.4
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 4.3e-225 785.4 689 57.5
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.1e-224 783.1 771 52.4
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 2.8e-224 782.7 814 51.4
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.0e-221 774.2 777 53.8
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.7e-221 773.5 693 57.9
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 2.9e-221 772.7 819 49.9
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 3.8e-221 772.3 790 51.9
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 6.5e-221 771.5 798 52.0
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.1e-220 770.8 714 57.8
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 5.5e-220 768.5 794 51.6
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 4.6e-219 765.4 533 65.3
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 2.3e-218 763.1 798 51.4
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 3.0e-218 762.7 737 53.7
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 1.1e-217 760.8 777 52.9
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 1.5e-217 760.4 767 52.7
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 3.7e-216 755.7 706 56.4
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.4e-215 753.1 863 49.9
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.7e-213 746.9 800 50.4
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 2.1e-211 740.0 778 51.4
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 2.7e-211 739.6 780 50.8
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 1.4e-210 737.3 776 52.3
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.2e-206 724.2 686 54.4
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 6.5e-205 718.4 797 48.2
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 3.3e-201 706.1 773 50.1
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 4.4e-201 705.7 769 48.2
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 3.5e-198 696.0 657 54.6
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.9e-196 690.3 603 61.7
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 6.8e-178 628.6 579 57.3
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 1.3e-157 561.2 497 61.0
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.2e-153 548.1 800 43.4
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.2e-152 543.9 587 53.0
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 6.4e-144 515.8 462 54.5
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 5.4e-143 512.7 336 68.2
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 3.5e-142 510.0 572 47.9
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.2e-134 485.0 636 45.8
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 6.2e-131 472.6 402 61.7
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 2.1e-118 431.0 381 55.1
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.6e-115 421.4 285 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 2.4e-106 391.0 349 54.7
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.3e-101 374.4 411 47.2
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 1.6e-94 351.7 527 43.8
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 3.9e-85 320.5 357 52.9
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 6.3e-67 260.0 188 62.8
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 8.8e-61 239.6 194 58.8
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 1.5e-60 238.8 332 40.7
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.0e-57 228.4 317 46.1
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 2.3e-45 188.3 170 51.2
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-27 129.0 341 30.8
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.0e-24 119.8 78 64.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.3e-23 114.8 117 50.4
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 4.7e-22 110.9 280 38.2
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.4e-19 100.1 80 60.0
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 3.5e-17 94.7 72 56.9
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.7e-11 75.9 132 36.4
HPP92_011512 Vanilla planifolia HOM05D007000 ORTHO05D428354 2.1e-09 68.9 184 31.5
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 1.1e-07 63.2 151 41.7


User provided reference genes

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