Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 1.4e-290 1002.3 525 100.0
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 1.9e-223 779.2 529 79.0
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 1.3e-222 776.5 525 79.0
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 9.0e-213 743.8 535 73.8
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 5.8e-204 714.5 525 73.3
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 9.6e-199 697.2 532 69.7
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 2.9e-195 685.6 504 73.2
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 2.9e-195 685.6 504 73.2
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 4.2e-186 655.2 534 66.9
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 5.5e-186 654.8 512 71.3
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 1.5e-170 603.6 589 58.7
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 4.1e-165 585.5 425 72.0
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 2.8e-158 562.8 539 58.8
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 4.8e-158 562.0 510 59.8
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 1.7e-147 526.9 508 57.1
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 2.9e-147 526.2 507 57.0
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 6.6e-147 525.0 517 56.3
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 1.1e-146 524.2 507 55.6
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 1.5e-146 523.9 510 57.8
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 7.3e-146 521.5 514 56.2
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 3.6e-145 519.2 502 57.2
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 5.2e-144 515.4 516 57.0
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 8.9e-144 514.6 526 53.8
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 4.4e-143 512.3 507 55.6
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 5.7e-143 511.9 502 55.4
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 1.3e-142 510.8 502 55.4
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 4.1e-141 505.8 505 54.7
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 5.4e-141 505.4 518 55.2
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 8.6e-139 498.0 501 56.7
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 3.3e-138 496.1 524 53.6
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 3.3e-138 496.1 524 53.6
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 9.5e-138 494.6 505 53.7
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 2.8e-137 493.0 501 55.9
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 2.0e-135 486.9 466 58.6
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 2.6e-135 486.5 505 52.9
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 1.9e-133 480.3 504 52.4
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 1.2e-132 477.6 513 51.3
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 4.6e-132 475.7 505 51.3
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 3.3e-130 469.5 527 49.7
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 4.3e-130 469.2 464 55.0
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 1.6e-129 467.2 511 52.1
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 2.1e-129 466.8 536 50.4
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 6.2e-129 465.3 504 53.8
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 6.2e-129 465.3 511 51.3
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 2.3e-128 463.4 523 53.0
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 4.0e-128 462.6 565 48.3
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 1.2e-127 461.1 500 52.0
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 2.0e-127 460.3 506 50.8
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 3.4e-127 459.5 506 50.8
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 1.3e-126 457.6 515 50.7
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 1.3e-126 457.6 511 50.5
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 1.3e-126 457.6 505 50.7
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 2.2e-126 456.8 503 49.9
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 2.9e-126 456.4 552 47.8
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 8.3e-126 454.9 505 51.1
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 5.4e-125 452.2 505 48.9
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 9.2e-125 451.4 522 49.6
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 3.5e-124 449.5 508 49.8
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 3.5e-124 449.5 501 50.7
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 1.7e-123 447.2 521 48.6
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 6.6e-123 445.3 526 48.7
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 1.5e-122 444.1 504 49.8
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 1.5e-122 444.1 503 50.7
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 9.5e-122 441.4 459 52.3
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 1.2e-121 441.0 499 48.9
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 1.1e-120 438.0 452 54.0
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 5.2e-120 435.6 509 50.5
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 5.8e-119 432.2 516 47.5
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 5.8e-119 432.2 491 50.3
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 2.2e-118 430.3 467 51.2
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 3.8e-118 429.5 509 46.8
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 4.9e-118 429.1 499 49.1
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 4.9e-118 429.1 506 49.6
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 1.9e-117 427.2 507 49.5
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 3.2e-117 426.4 407 57.5
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 1.2e-116 424.5 498 48.8
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 1.0e-115 421.4 503 50.1
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 2.3e-115 420.2 565 45.1
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 2.5e-114 416.8 521 46.8
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 2.5e-114 416.8 509 48.3
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 4.3e-114 416.0 444 54.5
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 5.6e-114 415.6 490 48.4
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 9.6e-114 414.8 459 50.1
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 7.6e-111 405.2 497 48.3
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 3.8e-110 402.9 521 46.1
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 5.3e-104 382.5 518 44.8
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 4.9e-102 375.9 376 56.6
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 2.4e-101 373.6 502 44.4
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 2.7e-100 370.2 351 59.3
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 2.8e-97 360.1 558 41.4
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 6.2e-97 359.0 535 43.2
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 9.9e-95 351.7 217 84.3
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 8.4e-94 348.6 420 51.4
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 3.7e-89 333.2 430 45.8
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 4.5e-87 326.2 515 39.8
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 3.8e-86 323.2 515 40.0
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 7.6e-79 298.9 364 46.4
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 2.5e-74 283.9 509 38.3
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 5.7e-74 282.7 491 39.3
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 1.9e-69 267.7 194 71.1
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 9.7e-66 255.4 535 32.9
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 2.4e-64 250.8 373 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 3.1e-64 250.4 417 40.0
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 1.8e-59 234.6 374 39.0
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 4.8e-57 226.5 343 38.2
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 2.7e-52 210.7 251 50.2
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 3.0e-51 207.2 173 60.7
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 3.8e-46 190.3 210 50.5
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 8.3e-41 172.6 208 51.9
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 8.0e-36 156.0 204 45.1
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 2.7e-31 141.0 159 47.8
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 3.5e-31 140.6 177 44.1
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 1.8e-19 101.7 141 42.6
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 4.4e-18 97.1 300 26.7
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.5e-13 82.0 100 43.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 6.2e-12 76.6 127 39.4
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 4.0e-11 73.9 70 51.4
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 8.9e-11 72.8 53 67.9
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 5.8e-10 70.1 113 36.3
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.1e-08 63.9 116 38.8
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 9.2e-08 62.8 53 64.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 2.1e-07 61.6 114 37.7
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 3.5e-07 60.8 113 38.9
SEGI_37044 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 1.7e-06 58.5 91 38.5


User provided reference genes

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