Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.9e-150 535.8 265 100.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.3e-116 422.5 269 78.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 6.1e-109 397.9 271 76.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 3.0e-108 395.6 262 74.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 9.7e-107 390.6 270 71.1
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.6e-104 383.3 270 71.5
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.0e-103 380.6 270 71.1
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 5.0e-95 351.7 273 66.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.5e-86 322.8 232 67.2
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 4.3e-86 322.0 273 59.7
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 7.3e-86 321.2 267 64.4
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.1e-85 319.7 235 66.4
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.1e-85 319.7 236 64.0
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.8e-84 316.6 251 62.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.3e-84 316.2 277 58.1
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.8e-84 314.7 232 64.7
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 6.8e-84 314.7 236 64.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.2e-83 313.9 266 60.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.2e-83 313.9 225 65.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.0e-83 313.2 230 65.2
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 3.4e-83 312.4 236 66.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 7.5e-83 311.2 223 65.9
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.7e-82 310.1 230 64.8
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.2e-82 309.7 254 59.1
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.9e-82 308.5 258 59.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.9e-82 308.5 272 57.0
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 8.3e-82 307.8 254 58.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.1e-81 307.4 231 66.2
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.1e-81 307.4 223 65.9
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.4e-81 307.0 258 58.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.2e-81 305.8 223 65.5
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.1e-81 305.4 236 61.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 5.4e-81 305.1 226 65.0
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 7.0e-81 304.7 223 65.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.2e-81 304.3 239 66.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 9.2e-81 304.3 254 57.9
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.2e-80 303.9 237 62.4
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.5e-80 302.4 223 64.6
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.5e-80 302.4 223 65.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 4.6e-80 302.0 236 61.4
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.0e-79 300.8 223 62.3
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.3e-79 300.4 232 62.9
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.7e-79 300.1 223 64.1
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.7e-79 300.1 226 65.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.3e-79 299.7 223 64.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 3.0e-79 299.3 222 65.3
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 3.9e-79 298.9 239 60.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 5.0e-79 298.5 236 61.9
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.9e-78 296.6 259 56.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.9e-78 296.6 238 59.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 3.3e-78 295.8 227 60.8
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.6e-78 295.0 223 63.2
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 9.5e-78 294.3 223 62.8
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.2e-77 293.9 225 62.2
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.1e-77 293.1 223 62.8
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.6e-77 292.4 225 62.7
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.4e-76 290.4 215 63.3
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.8e-76 290.0 268 56.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.1e-76 289.3 228 61.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 6.8e-76 288.1 232 61.2
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-75 287.3 236 58.5
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.2e-75 287.3 236 58.5
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.0e-75 286.6 225 61.8
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.0e-75 286.6 225 61.8
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-75 286.6 232 60.8
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.6e-75 286.2 268 55.6
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.4e-75 285.8 225 60.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.4e-75 285.8 236 58.5
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.4e-75 285.4 225 60.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 5.8e-75 285.0 223 61.4
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 7.5e-75 284.6 225 60.4
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.5e-75 284.6 229 58.1
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.3e-74 283.9 225 60.4
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.9e-74 282.0 225 60.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 7.0e-73 278.1 261 53.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.2e-73 277.7 225 60.4
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.0e-71 274.2 223 57.8
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.6e-71 271.6 254 54.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.9e-70 270.0 236 57.2
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.9e-70 270.0 223 57.4
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 4.3e-70 268.9 239 56.1
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 4.3e-70 268.9 202 64.9
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 5.6e-70 268.5 225 55.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.1e-69 266.5 222 59.9
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-67 260.0 223 59.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.7e-66 256.9 195 64.6
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.2e-66 256.5 195 64.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 4.9e-66 255.4 188 67.0
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 7.1e-65 251.5 245 54.3
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.1e-64 250.0 245 52.2
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.3e-63 247.3 242 54.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.5e-62 243.8 233 51.5
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.9e-62 243.4 183 66.7
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.4e-60 237.3 243 50.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.8e-60 236.9 220 55.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 3.8e-58 229.2 218 55.0
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.4e-57 227.3 220 53.6
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-57 226.1 186 60.8
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-56 224.2 225 53.3
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-55 219.2 181 60.8
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.5e-54 217.2 179 64.2
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.9e-50 203.0 160 61.2
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-45 187.6 201 52.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.6e-43 178.3 224 49.6
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 6.4e-42 175.3 120 68.3
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.1e-38 164.5 118 63.6
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.9e-34 149.8 214 36.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-31 140.2 140 50.7
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 6.7e-31 138.7 122 59.0
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 6.7e-31 138.7 116 60.3
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.7e-29 132.9 122 50.8
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.8e-27 125.6 118 52.5
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.3e-25 118.2 237 37.6
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.2e-24 117.9 112 54.5
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-22 110.9 103 55.3
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-22 110.5 74 66.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.8e-20 104.0 87 56.3
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-19 100.9 71 69.0
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-18 98.2 137 45.3
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-17 93.6 83 56.6
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.2e-17 92.8 66 63.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.5e-14 84.3 91 45.1
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 3.3e-14 83.2 98 42.9
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 3.3e-14 83.2 83 44.6
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-14 82.8 99 48.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.8e-13 79.3 66 54.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.3e-12 75.9 88 45.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 2.2e-10 70.5 72 47.2
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 8.8e-07 58.5 71 39.4
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-06 57.8 50 50.0
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.3e-06 56.6 41 56.1
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 3.3e-06 56.6 71 38.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 7.4e-06 55.5 39 66.7
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 9.7e-06 55.1 211 25.6


User provided reference genes

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