Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 2.3e-114 415.6 216 100.0
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 1.7e-101 372.9 218 90.4
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.8e-87 326.2 217 81.6
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 8.3e-80 300.8 220 78.6
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 3.1e-79 298.9 219 74.4
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 3.7e-72 275.4 218 72.0
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.4e-71 273.5 217 71.9
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 4.1e-71 271.9 218 71.6
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 9.2e-71 270.8 212 72.2
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 2.3e-69 266.2 217 69.1
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 2.3e-69 266.2 217 70.5
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 5.0e-69 265.0 188 76.1
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 8.6e-69 264.2 228 67.5
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 8.6e-69 264.2 184 74.5
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 8.6e-69 264.2 217 68.7
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 8.6e-69 264.2 218 68.8
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.5e-68 263.5 217 68.7
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 4.3e-68 261.9 219 66.7
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 4.3e-68 261.9 219 66.7
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 7.3e-68 261.2 241 63.9
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 9.5e-68 260.8 189 73.5
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 6.2e-67 258.1 220 69.1
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 6.2e-67 258.1 222 64.9
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 8.0e-67 257.7 223 65.5
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 1.0e-66 257.3 217 66.8
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 5.2e-66 255.0 216 67.6
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.6e-65 252.7 226 65.5
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.4e-65 252.3 224 65.6
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 1.3e-64 250.4 227 65.6
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 2.2e-64 249.6 220 65.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.2e-64 249.6 205 68.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 3.7e-64 248.8 205 68.3
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.1e-63 247.3 216 64.8
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 1.9e-63 246.5 223 64.1
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.9e-63 246.5 223 64.1
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 2.4e-63 246.1 225 64.9
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.4e-63 246.1 216 63.9
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 3.2e-63 245.7 206 67.5
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.0e-63 244.6 216 64.4
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 7.0e-63 244.6 212 67.9
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 9.2e-63 244.2 223 64.1
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 9.2e-63 244.2 225 64.0
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 4.6e-62 241.9 222 60.4
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 7.8e-62 241.1 213 66.2
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 7.8e-62 241.1 228 61.8
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.7e-61 240.0 226 63.7
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.7e-61 240.0 219 61.6
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 3.9e-61 238.8 207 66.7
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.6e-61 238.0 169 73.4
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 6.6e-61 238.0 203 66.5
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.1e-60 237.3 199 68.8
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.9e-60 236.5 221 63.3
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 3.3e-60 235.7 212 64.6
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 4.3e-60 235.3 227 61.2
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 7.3e-60 234.6 197 66.0
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.2e-59 233.8 162 74.7
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.2e-59 233.8 180 70.0
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 1.2e-59 233.8 170 74.1
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.8e-59 232.6 151 81.5
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.1e-58 230.7 193 68.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.1e-58 230.7 195 66.7
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.1e-58 230.7 212 62.3
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.2e-58 228.4 223 62.8
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 6.8e-58 228.0 223 62.8
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 6.8e-58 228.0 162 77.2
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 8.9e-58 227.6 227 62.1
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.2e-57 227.3 223 62.8
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.2e-57 227.3 223 62.8
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.2e-57 227.3 223 62.8
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.6e-57 226.1 183 68.3
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.6e-57 226.1 214 60.3
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 5.8e-57 224.9 210 60.5
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 7.5e-57 224.6 181 71.3
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 7.5e-57 224.6 221 60.2
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 9.8e-57 224.2 188 68.6
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.3e-56 223.8 188 68.6
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 1.7e-56 223.4 207 64.3
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 2.9e-56 222.6 156 76.9
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 8.3e-56 221.1 222 62.2
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.4e-55 218.4 147 77.6
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 3.5e-54 215.7 162 74.1
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 2.5e-52 209.5 216 59.3
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 3.3e-52 209.1 170 69.4
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 1.8e-50 203.4 186 61.8
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 2.6e-49 199.5 179 64.8
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 7.6e-49 198.0 179 64.8
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 6.4e-48 194.9 206 56.8
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 7.1e-47 191.4 228 56.1
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 8.6e-45 184.5 190 59.5
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.4e-42 177.2 147 65.3
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 2.4e-42 176.4 162 60.5
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 3.2e-39 166.0 194 51.5
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 7.1e-39 164.9 118 72.9
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 1.6e-38 163.7 169 55.6
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 2.7e-38 162.9 107 80.4
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 1.8e-34 150.2 102 73.5
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 2.5e-28 129.8 82 84.1
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.6e-27 127.1 82 82.9
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.7e-22 109.8 153 49.7
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 3.0e-21 106.3 73 76.7
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.9e-21 105.9 88 61.4
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.8e-19 99.0 81 65.4
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 6.2e-19 98.6 211 32.7
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.0e-17 93.6 103 54.4
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 1.6e-14 84.0 58 74.1
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 7.4e-12 75.1 108 38.0
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 4.5e-09 65.9 45 71.1
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.5e-09 65.9 45 71.1
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 1.4e-07 60.8 107 37.4
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 1.2e-06 57.8 97 33.0
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 7.9e-06 55.1 91 35.2


User provided reference genes

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