Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2503.0 1258 100.0
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2388.6 1274 94.0
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2379.0 1258 94.9
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2308.9 1258 92.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2265.0 1259 89.2
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2261.1 1259 89.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2241.1 1258 88.2
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2203.3 1258 87.0
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2188.7 1259 85.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2179.8 1285 84.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2102.4 1257 83.3
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2051.9 1161 87.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1983.0 1258 79.0
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1977.6 1261 78.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1968.7 1258 77.7
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1967.6 1259 77.4
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1965.7 1259 77.4
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1962.2 1258 77.6
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1959.9 1258 78.0
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1959.5 1258 77.8
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1959.1 1257 77.1
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1950.3 1257 77.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1946.8 1259 77.3
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1945.6 1264 76.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1257 76.5
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1942.9 1258 77.3
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1257 76.8
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1937.9 1257 76.5
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1935.6 1273 76.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1932.9 1257 76.8
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1928.7 1300 74.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1927.5 1264 76.1
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1927.1 1256 76.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1926.8 1257 76.2
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1926.0 1257 75.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1258 75.9
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1924.1 1257 75.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1921.4 1257 75.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1920.6 1256 75.2
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1919.1 1257 75.8
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1909.8 1258 75.8
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1256 75.6
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1904.0 1260 74.5
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1266 74.4
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1260 74.6
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1888.2 1259 74.4
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1887.1 1261 74.6
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1886.7 1252 75.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1886.3 1240 76.9
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1325 71.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1874.4 1259 73.9
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1517 65.6
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1872.8 1261 74.0
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1872.4 1280 73.3
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1261 73.4
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1864.4 1259 73.0
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1261 73.1
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1863.2 1260 73.0
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1860.9 1263 73.1
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1859.7 1260 73.0
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1859.3 1262 73.1
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1857.4 1265 72.6
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1261 73.0
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1258 72.7
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1850.5 1259 72.7
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1848.9 1260 72.4
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1846.6 1259 72.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1845.5 1260 72.2
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1843.2 1289 71.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1841.2 1262 72.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1258 73.9
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1840.1 1257 73.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1257 72.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1257 72.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1261 72.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1822.8 1257 72.2
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1260 72.7
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1818.1 1266 71.6
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1817.7 1006 90.5
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1812.7 1259 71.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1812.7 1242 73.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1808.9 1258 71.7
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1806.2 1261 71.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1260 72.0
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1804.3 1258 71.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1268 70.5
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1789.6 1169 76.0
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1774.2 1243 71.3
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1746.1 1271 70.3
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1734.5 1322 67.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1730.7 1240 70.6
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1724.9 1256 68.0
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1667.5 1253 66.8
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1568.9 1033 76.1
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1566.2 1231 64.7
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1557.7 1078 72.1
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1556.6 1095 71.0
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1545.8 1261 62.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1507.7 1051 72.5
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1503.4 1033 72.9
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1469.5 1059 70.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1404.8 1097 66.6
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1373.2 1013 68.6
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1358.2 923 74.3
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1344.7 856 77.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1273.8 1392 50.1
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1178.7 1263 53.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1163.3 1358 47.0
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1120.9 774 71.6
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1105.9 746 72.9
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.1e-296 1023.8 864 61.3
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-296 1023.1 848 66.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 5.4e-288 995.0 1013 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 8.3e-281 971.1 1168 46.4
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 4.4e-258 895.6 592 76.5
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-245 854.4 538 77.7
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.4e-241 838.6 446 93.5
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.5e-194 682.9 1437 33.7
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 5.0e-177 626.3 450 68.0
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.7e-153 548.1 306 86.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.1e-150 537.3 499 57.5
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.6e-119 434.1 316 67.1
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 4.2e-99 367.5 205 86.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-98 365.9 211 88.2
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-96 358.6 207 88.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-93 349.4 316 62.3
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.4e-91 342.4 372 48.7
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.1e-86 324.3 194 78.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 8.8e-81 306.6 255 61.2
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.8e-79 300.8 172 84.9
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 9.4e-75 286.6 159 89.3
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-70 272.7 257 56.0
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-70 272.7 257 56.0
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-70 272.7 257 56.0
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.3e-70 270.8 262 51.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.6e-69 269.2 194 66.5
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.0e-68 266.5 152 82.9
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.3e-65 255.4 449 36.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.2e-60 238.8 197 60.4
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 6.8e-57 227.3 151 70.9
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.1e-54 218.0 150 71.3
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.9e-47 194.5 138 68.8
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.3e-47 193.7 132 65.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-43 183.0 102 89.2
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 9.5e-43 180.3 147 61.9
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.0e-42 177.2 107 73.8
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.9e-41 173.7 121 72.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.0e-40 172.6 107 72.0
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.4e-40 171.4 131 65.6
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 9.8e-40 170.2 149 57.0
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.7e-39 168.3 98 85.7
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.9e-39 167.9 107 70.1
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.9e-39 167.9 107 70.1
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.4e-38 164.5 106 69.8
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.0e-37 161.0 107 73.8
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 3.9e-36 158.3 116 69.0
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.9e-31 141.4 81 76.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.4e-30 139.8 65 95.4
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-29 136.3 78 79.5
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.3e-28 132.5 186 44.6
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.1e-26 125.9 123 57.7
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-26 125.9 87 67.8
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.7e-21 109.0 119 43.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-19 102.4 62 75.8
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 3.3e-19 102.1 109 52.3
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-16 93.6 81 59.3
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.2e-16 93.6 57 75.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.8e-16 91.3 52 76.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.8e-15 88.6 570 23.0
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.6e-13 83.2 388 22.4
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 2.7e-13 82.4 99 46.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.6e-10 73.2 69 49.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.4e-09 69.3 45 75.6
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.0e-09 67.4 52 65.4


User provided reference genes

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