Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g079540 Medicago truncatula HOM05D003840 ORTHO05D004565 4.7e-26 120.6 66 100.0
Medtr5g010400 Medicago truncatula HOM05D003840 ORTHO05D004565 3.1e-14 81.3 61 75.4
TPR.G38959 Trifolium pratense HOM05D003840 ORTHO05D004565 1.0e-12 76.3 62 74.2
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 1.9e-11 72.0 55 74.5
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 1.9e-11 72.0 55 74.5
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 2.5e-11 71.6 54 77.8
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 4.3e-11 70.9 55 72.7
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 4.3e-11 70.9 55 72.7
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 9.5e-11 69.7 55 72.7
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 2.1e-10 68.6 55 74.5
Lalb_Chr25g0286531 Lupinus albus HOM05D003840 ORTHO05D004565 2.8e-10 68.2 55 72.7
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 6.1e-10 67.0 55 69.1
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 6.1e-10 67.0 53 69.8
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 6.1e-10 67.0 55 69.1
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 8.0e-10 66.6 55 70.9
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.4e-09 65.9 55 67.3
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 1.8e-09 65.5 54 70.4
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 4.0e-09 64.3 55 67.3
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 4.0e-09 64.3 55 67.3
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 4.0e-09 64.3 55 67.3
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 5.2e-09 63.9 49 69.4
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 6.8e-09 63.5 55 67.3
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 8.9e-09 63.2 54 66.7
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 8.9e-09 63.2 55 65.5
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 8.9e-09 63.2 55 65.5
TPR.G39016 Trifolium pratense HOM05D003840 ORTHO05D004565 8.9e-09 63.2 49 69.4
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 1.2e-08 62.8 54 68.5
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.2e-08 62.8 55 65.5
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.2e-08 62.8 55 65.5
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 2.0e-08 62.0 55 67.3
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 2.6e-08 61.6 53 66.0
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 2.6e-08 61.6 54 66.7
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 2.6e-08 61.6 55 63.6
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 3.4e-08 61.2 55 67.3
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 3.4e-08 61.2 55 67.3
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 4.4e-08 60.8 56 67.9
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 7.5e-08 60.1 53 62.3
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 7.5e-08 60.1 51 66.7
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 7.5e-08 60.1 54 66.7
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 7.5e-08 60.1 55 65.5
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 7.5e-08 60.1 49 67.3
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 7.5e-08 60.1 49 67.3
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 9.8e-08 59.7 56 62.5
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 9.8e-08 59.7 55 63.6
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 9.8e-08 59.7 49 67.3
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 9.8e-08 59.7 56 67.9
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 1.3e-07 59.3 57 64.9
VMungo0540G2174 Vigna mungo HOM05D003840 ORTHO05D004565 1.3e-07 59.3 55 60.0
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 1.7e-07 58.9 55 65.5
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 1.7e-07 58.9 56 67.9
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 1.7e-07 58.9 56 67.9
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 2.2e-07 58.5 55 69.1
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 2.2e-07 58.5 55 63.6
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 2.9e-07 58.2 55 63.6
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 3.7e-07 57.8 55 65.5
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 3.7e-07 57.8 55 60.0
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 4.9e-07 57.4 56 60.7
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 4.9e-07 57.4 54 64.8
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 4.9e-07 57.4 55 60.0
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 8.3e-07 56.6 41 70.7
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 8.3e-07 56.6 55 60.0
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 8.3e-07 56.6 54 63.0
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 1.1e-06 56.2 53 60.4
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 1.4e-06 55.8 52 57.7
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 1.4e-06 55.8 49 65.3
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 1.4e-06 55.8 53 66.0
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.4e-06 55.8 55 60.0
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 1.4e-06 55.8 63 58.7
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 1.9e-06 55.5 57 61.4
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 1.9e-06 55.5 55 61.8
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 1.9e-06 55.5 53 62.3
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 1.9e-06 55.5 53 62.3
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 1.9e-06 55.5 56 58.9
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 3.2e-06 54.7 49 65.3
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 3.2e-06 54.7 50 68.0
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 4.1e-06 54.3 57 57.9
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 5.4e-06 53.9 43 69.8
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 5.4e-06 53.9 55 60.0
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 5.4e-06 53.9 55 61.8
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 7.0e-06 53.5 57 57.9
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 7.0e-06 53.5 53 62.3
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 9.2e-06 53.1 54 59.3
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 9.2e-06 53.1 46 63.0


User provided reference genes

Program Settings