Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 6.4e-79 297.4 150 100.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.2e-18 96.3 52 100.0
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 3.6e-13 79.0 52 78.8
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.0e-12 77.4 52 76.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.0e-12 77.4 54 75.9
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.4e-12 77.0 52 76.9
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.8e-12 76.6 52 78.8
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.3e-12 76.3 52 75.0
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.5e-11 72.8 52 76.9
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.3e-11 72.4 52 67.3
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.3e-11 72.0 52 71.2
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 5.7e-11 71.6 47 74.5
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 9.7e-11 70.9 48 70.8
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.3e-10 70.5 50 72.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.2e-10 69.7 52 69.2
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.8e-10 68.6 52 67.3
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 4.8e-10 68.6 52 67.3
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.2e-10 67.8 52 69.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 8.2e-10 67.8 52 69.2
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 8.2e-10 67.8 52 69.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.4e-09 67.0 50 70.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 2.4e-09 66.2 52 65.4
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.1e-09 65.9 50 66.0
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.1e-09 65.9 47 68.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 4.1e-09 65.5 50 64.0
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 4.1e-09 65.5 50 64.0
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 5.3e-09 65.1 87 43.7
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 9.1e-09 64.3 52 59.6
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.2e-08 63.9 47 68.1
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.5e-08 63.5 50 64.0
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.5e-08 63.5 50 64.0
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.5e-08 63.5 50 56.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 64.0
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 64.0
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 64.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 64.0
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.0e-08 63.2 47 66.0
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 62.0
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.0e-08 63.2 50 62.0
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.6e-08 62.8 50 64.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.6e-08 62.8 50 64.0
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.6e-08 62.8 50 64.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.6e-08 62.8 50 64.0
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 3.4e-08 62.4 48 66.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 3.4e-08 62.4 88 43.2
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.4e-08 62.4 50 62.0
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 4.5e-08 62.0 50 62.0
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-08 62.0 44 70.5
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.5e-08 62.0 44 70.5
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 4.5e-08 62.0 50 64.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.5e-08 62.0 47 66.0
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 4.5e-08 62.0 50 58.0
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 4.5e-08 62.0 50 60.0
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 5.9e-08 61.6 50 62.0
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 5.9e-08 61.6 110 38.2
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 5.9e-08 61.6 47 61.7
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 5.9e-08 61.6 47 61.7
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 58.0
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 64.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 62.0
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 62.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 62.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 62.0
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 64.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 7.7e-08 61.2 47 61.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 7.7e-08 61.2 50 62.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 7.7e-08 61.2 47 59.6
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.0e-07 60.8 50 60.0
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.3e-07 60.5 50 62.0
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 1.7e-07 60.1 50 60.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.2e-07 59.7 50 62.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 5.0e-07 58.5 44 65.9
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 6.5e-07 58.2 50 60.0
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 6.5e-07 58.2 50 58.0
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 6.5e-07 58.2 50 58.0
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.5e-07 58.2 88 39.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 6.5e-07 58.2 52 53.8
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 8.5e-07 57.8 50 52.0
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 8.5e-07 57.8 47 63.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.1e-06 57.4 50 60.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.1e-06 57.4 50 52.0
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.4e-06 57.0 52 51.9
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.4e-06 57.0 37 75.7
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.4e-06 57.0 39 74.4
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.9e-06 56.6 48 68.8
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-06 56.6 43 58.1
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.9e-06 56.6 51 52.9
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 4.2e-06 55.5 52 53.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.5e-06 55.1 50 52.0
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 5.5e-06 55.1 50 48.0
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 9.4e-06 54.3 51 51.0
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.4e-06 54.3 50 50.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 9.4e-06 54.3 52 55.8


User provided reference genes

Program Settings