Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 1.6e-267 926.0 518 100.0
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 6.9e-178 628.2 501 72.5
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 1.9e-175 620.2 476 73.5
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 1.0e-141 508.1 500 61.8
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 6.1e-134 482.3 502 57.4
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 2.1e-102 377.5 488 52.3
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 3.1e-101 373.6 503 49.9
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 7.0e-98 362.5 469 50.1
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 5.6e-87 326.2 489 46.4
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.3e-83 315.1 485 45.6
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 3.3e-47 194.1 495 36.8
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 1.5e-44 185.3 486 35.8
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 2.7e-41 174.5 526 33.3
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 4.6e-41 173.7 253 48.2
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 3.3e-39 167.5 495 35.6
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 4.8e-38 163.7 508 33.9
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 8.2e-38 162.9 506 33.8
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 4.1e-37 160.6 504 32.1
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 4.5e-36 157.1 509 33.8
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 7.7e-36 156.4 496 34.1
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.3e-35 155.6 500 32.2
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.7e-35 155.2 502 33.3
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 3.8e-35 154.1 510 32.5
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 6.5e-35 153.3 510 32.4
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 1.1e-34 152.5 486 34.6
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 1.6e-33 148.7 467 32.3
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.1e-33 148.3 509 32.4
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 2.7e-33 147.9 555 30.8
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 3.6e-33 147.5 507 31.4
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.6e-33 147.1 510 31.6
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 4.6e-33 147.1 503 32.0
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 6.1e-33 146.7 554 31.0
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 7.9e-33 146.4 507 31.4
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.0e-32 146.0 510 31.2
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.8e-32 145.2 509 32.2
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.9e-32 144.1 505 32.1
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.0e-31 141.7 481 31.4
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 5.7e-31 140.2 481 32.8
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 9.7e-31 139.4 509 31.6
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 2.6e-28 131.3 482 32.4
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 1.1e-26 125.9 489 31.9
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.2e-25 122.5 496 31.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 1.6e-25 122.1 512 33.2
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.7e-25 121.3 494 31.2
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 2.3e-24 118.2 499 29.9
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 2.0e-23 115.2 496 30.4
Psat0s5292g0040 Pisum sativum HOM05D001175 ORTHO05D001594 5.7e-23 113.6 96 68.8
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.7e-22 112.1 503 28.2
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 2.2e-22 111.7 492 30.9
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 7.0e-21 106.7 525 28.6
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 4.5e-20 104.0 506 29.1
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 3.8e-19 100.9 493 27.2
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 6.5e-19 100.1 57 94.7
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 3.2e-18 97.8 454 29.3
TPR.G16985 Trifolium pratense HOM05D007892 ORTHO05D009211 5.5e-18 97.1 66 75.8
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 7.2e-18 96.7 495 26.9
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 2.1e-17 95.1 497 28.8
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 2.7e-17 94.7 489 28.4
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 8.0e-17 93.2 501 29.9
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 8.0e-17 93.2 467 28.7
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 1.4e-16 92.4 488 28.7
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 6.7e-16 90.1 476 28.2
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.1e-15 89.4 487 27.3
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 2.0e-15 88.6 300 32.3
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 5.7e-15 87.0 495 27.1
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 9.7e-15 86.3 501 28.3
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 1.7e-14 85.5 473 27.1
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 2.2e-14 85.1 503 26.0
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 8.2e-14 83.2 575 27.7
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.4e-13 82.4 490 27.3
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.4e-13 82.4 492 26.4
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 7.0e-13 80.1 484 27.3
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 5.9e-12 77.0 481 26.4
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 1.0e-11 76.3 57 73.7
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.7e-11 75.5 484 27.7
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 5.5e-10 70.5 86 47.7
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 4.7e-09 67.4 491 26.7
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 6.1e-09 67.0 166 33.7
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 2.3e-08 65.1 204 34.8
Zm00001eb298400 Zea mays HOM05D061528 ORTHO05D009211 5.2e-08 63.9 409 25.9
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.6e-07 61.6 473 24.7
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 3.4e-07 61.2 346 28.3
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 4.4e-07 60.8 117 39.3
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 7.5e-07 60.1 469 24.9
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 9.8e-07 59.7 203 32.0
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 2.2e-06 58.5 33 84.8
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 2.2e-06 58.5 469 25.4
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 3.7e-06 57.8 203 31.5
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 3.7e-06 57.8 203 31.5
Aa31LG3G10020 Aethionema arabicum HOM05D012500 ORTHO05D009211 4.8e-06 57.4 31 87.1
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 6.3e-06 57.0 182 31.9
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 8.3e-06 56.6 431 26.0


User provided reference genes

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