Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 2.4e-137 492.3 272 100.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.2e-99 367.1 291 75.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.2e-93 346.3 286 74.8
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 8.2e-93 344.4 284 75.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.4e-92 342.8 272 76.1
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 6.8e-79 298.1 282 64.5
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 2.0e-78 296.6 280 62.9
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.7e-77 293.5 304 61.8
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 1.7e-77 293.5 279 62.4
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.7e-72 276.2 253 62.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 6.8e-71 271.6 292 58.6
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.5e-70 270.4 255 62.0
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 8.0e-64 248.1 290 54.8
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.7e-61 240.4 287 53.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.7e-61 240.4 287 52.3
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 2.5e-57 226.5 289 50.5
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.3e-57 226.1 296 51.0
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.6e-56 223.8 272 53.3
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.6e-56 223.8 286 50.3
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 3.6e-56 222.6 270 54.4
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 4.7e-56 222.2 208 59.6
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 4.7e-56 222.2 282 52.5
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.0e-55 221.1 285 52.6
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 2.3e-55 219.9 285 52.6
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 6.8e-55 218.4 263 54.4
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.2e-54 217.6 289 49.1
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.5e-54 217.2 280 50.0
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.4e-54 216.1 278 52.9
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 3.4e-54 216.1 256 52.7
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 5.8e-54 215.3 291 49.5
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.8e-54 215.3 241 55.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 7.5e-54 214.9 271 50.9
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.9e-53 212.2 292 50.7
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 6.4e-53 211.8 268 50.0
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 6.4e-53 211.8 269 51.7
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.4e-53 211.8 287 50.5
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-52 210.7 252 54.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.4e-52 210.7 259 53.3
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 1.9e-52 210.3 265 50.9
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.9e-52 210.3 252 54.0
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.9e-52 210.3 297 48.5
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.9e-52 210.3 224 54.9
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 2.4e-52 209.9 229 56.8
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.4e-52 209.9 242 53.3
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 4.1e-52 209.1 290 48.6
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.2e-51 207.6 218 57.8
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.2e-51 207.6 289 50.2
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.6e-51 207.2 280 51.8
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.0e-51 206.8 280 50.7
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.7e-51 206.5 287 47.7
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 4.6e-51 205.7 263 49.8
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 6.0e-51 205.3 287 51.2
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 7.8e-51 204.9 221 56.1
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.0e-50 204.5 256 51.6
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.7e-50 203.8 253 51.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 6.6e-50 201.8 326 46.9
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.1e-49 201.1 279 49.1
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.1e-49 201.1 255 50.2
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.5e-49 200.7 263 49.0
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 2.5e-49 199.9 287 48.4
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 4.3e-49 199.1 271 49.8
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 4.3e-49 199.1 255 49.8
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 4.3e-49 199.1 255 49.8
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 4.3e-49 199.1 255 49.8
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 4.3e-49 199.1 257 49.8
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 4.3e-49 199.1 276 47.8
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.6e-49 198.7 284 48.6
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 9.5e-49 198.0 288 48.3
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.1e-48 196.8 232 52.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 2.1e-48 196.8 276 50.4
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 2.8e-48 196.4 274 49.6
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.8e-48 196.4 211 54.0
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.8e-48 196.4 227 51.5
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.6e-48 196.1 271 49.4
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.6e-48 196.1 222 54.1
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 4.7e-48 195.7 235 51.5
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 6.2e-48 195.3 269 47.2
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.1e-47 194.5 270 48.1
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 2.3e-47 193.4 245 52.7
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.3e-47 193.4 231 52.4
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 4.0e-47 192.6 206 55.3
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 8.9e-47 191.4 207 54.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.8e-46 188.7 286 47.9
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.7e-45 187.2 256 49.2
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.2e-45 186.8 267 48.3
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 8.3e-45 184.9 283 47.0
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.4e-44 184.1 235 50.6
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 3.0e-42 176.4 239 49.4
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 3.9e-42 176.0 226 51.3
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 3.9e-42 176.0 226 51.3
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.2e-40 171.0 218 49.5
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.3e-39 166.8 265 44.5
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.2e-39 165.6 271 45.8
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 3.4e-38 162.9 219 53.4
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 7.6e-38 161.8 248 46.4
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 1.3e-37 161.0 208 52.4
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 8.4e-37 158.3 268 43.7
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 4.1e-36 156.0 268 43.7
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 9.2e-36 154.8 256 44.9
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.1e-35 153.7 274 44.2
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.0e-35 152.1 151 57.0
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 3.0e-34 149.8 226 44.7
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 5.1e-34 149.1 264 42.4
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 6.6e-34 148.7 278 41.4
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 6.6e-34 148.7 221 46.2
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 3.3e-33 146.4 193 52.3
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 7.3e-33 145.2 212 47.2
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 9.6e-33 144.8 142 56.3
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 2.4e-31 140.2 169 53.3
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 6.9e-31 138.7 173 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 5.4e-28 129.0 169 44.4
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.5e-27 126.3 160 51.9
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 7.3e-25 118.6 144 51.4
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.8e-23 114.0 138 53.6
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.8e-23 114.0 195 41.5
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 3.1e-23 113.2 101 65.3
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 3.8e-21 106.3 174 42.5
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.9e-20 104.0 162 42.0
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 4.2e-20 102.8 235 37.0
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-19 100.5 164 44.5
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 2.1e-19 100.5 164 44.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 5.1e-18 95.9 148 47.3
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 4.0e-15 86.3 71 66.2
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 5.3e-15 85.9 73 64.4
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 8.4e-13 78.6 231 33.8
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.9e-12 77.4 201 32.3
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 4.6e-11 72.8 200 35.0
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 4.6e-11 72.8 163 39.3
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 4.8e-08 62.8 170 31.8
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-06 57.4 61 52.5
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.0e-06 57.4 107 40.2
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 2.6e-06 57.0 147 34.7
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.0e-05 55.1 81 48.1


User provided reference genes

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