Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 0.0e+00 1242.3 710 100.0
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.6e-241 839.7 740 72.6
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 9.0e-200 701.0 756 65.6
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.7e-190 670.2 754 60.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.8e-176 623.6 782 56.9
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.2e-174 616.7 763 58.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.1e-160 571.2 771 55.3
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 6.5e-158 562.0 742 58.8
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.9e-150 536.6 785 48.5
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 6.1e-148 528.9 793 49.7
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.2e-146 524.6 776 49.5
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 6.0e-143 512.3 705 51.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.7e-142 510.8 772 51.6
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.5e-141 507.7 816 47.9
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.5e-141 506.9 770 48.7
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.6e-140 503.1 779 49.2
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.7e-140 502.7 767 46.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.0e-138 497.3 739 49.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.9e-136 490.7 787 49.6
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.0e-135 485.7 805 48.0
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.8e-132 476.9 814 45.9
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.4e-131 474.6 786 49.2
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 4.4e-130 469.5 772 46.8
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.9e-129 466.8 776 45.9
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 8.3e-129 465.3 777 45.2
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.4e-128 464.5 773 47.5
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.2e-127 461.5 792 47.1
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.1e-127 460.7 760 47.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.0e-126 458.4 772 44.4
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.9e-125 454.1 793 45.9
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 7.3e-125 452.2 773 43.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.8e-123 447.6 759 46.2
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.7e-121 441.0 769 47.1
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.4e-120 437.2 744 45.6
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.2e-119 434.9 795 43.1
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.7e-119 433.7 794 44.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 6.0e-119 432.6 811 41.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.8e-119 432.2 767 47.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.0e-118 431.8 765 45.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.3e-118 431.4 773 45.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.1e-117 428.3 760 48.9
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-117 427.9 784 44.9
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.9e-117 427.6 783 43.3
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.3e-117 426.8 747 48.3
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.2e-116 422.5 794 45.6
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.2e-115 419.5 771 46.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 5.8e-114 416.0 771 47.3
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 8.4e-113 412.1 870 45.7
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 4.2e-112 409.8 749 41.4
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 7.1e-112 409.1 829 45.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.5e-111 406.8 767 44.7
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 4.6e-111 406.4 718 44.3
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 4.6e-111 406.4 799 39.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 3.0e-110 403.7 742 44.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.1e-109 401.7 800 40.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 3.3e-109 400.2 832 44.8
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 5.6e-109 399.4 716 43.2
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-106 391.7 667 46.0
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-106 391.7 787 44.5
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.6e-106 390.6 752 43.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 5.8e-106 389.4 744 41.9
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.9e-105 387.1 619 48.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.9e-105 387.1 780 42.2
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.4e-105 385.6 769 42.4
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.4e-104 384.8 756 43.7
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 2.7e-103 380.6 706 42.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 7.9e-103 379.0 720 43.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 7.9e-103 379.0 757 40.6
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.4e-99 368.2 759 40.7
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.4e-99 368.2 697 40.2
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 5.3e-99 366.3 819 44.1
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.6e-98 364.0 689 45.4
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 4.9e-97 359.8 754 40.7
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 6.4e-97 359.4 731 40.4
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.4e-96 358.2 752 39.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.4e-96 358.2 639 45.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.4e-96 357.5 789 40.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 7.1e-96 355.9 701 41.5
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 9.3e-96 355.5 696 41.4
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.1e-95 354.4 757 39.8
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.1e-95 354.4 768 43.1
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.7e-95 354.0 700 41.3
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 2.7e-95 354.0 746 39.5
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.9e-94 350.1 735 40.4
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 6.7e-94 349.4 754 42.7
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.8e-92 344.0 708 45.1
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.0e-90 337.8 709 44.3
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 4.5e-90 336.7 790 38.9
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.8e-89 333.6 725 44.4
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 3.2e-88 330.5 790 42.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.0e-86 325.5 712 43.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.4e-85 319.3 808 42.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-84 318.5 802 38.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.8e-84 317.4 735 41.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 6.3e-84 316.2 682 41.5
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.9e-83 312.8 682 39.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 9.0e-83 312.4 721 42.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.5e-82 311.6 759 39.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.0e-81 308.9 722 38.2
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-81 308.5 817 37.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.4e-80 302.4 737 39.1
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.7e-79 300.8 830 34.6
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 7.9e-79 299.3 777 38.4
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-78 297.7 696 37.5
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.3e-77 293.9 731 38.4
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.1e-75 288.9 752 36.7
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.4e-75 287.7 709 38.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 5.0e-73 280.0 788 39.8
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 7.2e-72 276.2 755 40.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.6e-71 275.0 751 41.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 4.7e-71 273.5 822 37.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.0e-70 272.3 613 37.2
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 5.1e-70 270.0 724 35.1
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 6.7e-70 269.6 703 39.1
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 6.7e-70 269.6 719 38.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.7e-68 265.0 752 38.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.7e-68 265.0 695 35.0
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 2.8e-68 264.2 744 36.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.1e-67 262.3 746 36.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-67 261.9 715 35.7
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-62 245.0 680 34.9
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 3.1e-59 234.2 750 34.5
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 3.1e-59 234.2 750 34.5
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 2.6e-58 231.1 760 34.3
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.5e-58 230.3 717 32.9
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.3e-57 228.8 765 35.3
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 6.5e-57 226.5 757 35.7
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-53 214.9 719 32.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.6e-53 214.5 669 33.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 7.5e-53 213.0 669 33.0
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.3e-52 212.2 615 35.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 6.3e-52 209.9 691 35.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.1e-51 209.1 669 32.4
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.1e-51 209.1 719 32.0
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.1e-51 207.2 781 32.4
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 4.5e-50 203.8 714 32.4
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.7e-49 201.8 593 36.8
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-49 201.4 452 43.1
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.3e-46 191.4 250 49.2
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.3e-46 191.4 688 34.0
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.0e-46 191.0 748 32.4
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 4.8e-44 183.7 361 41.0
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.7e-42 177.9 886 29.6
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 3.5e-42 177.6 884 31.6
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-41 175.6 820 34.6
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.8e-38 165.2 446 39.5
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.0e-38 164.1 893 28.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 8.3e-36 156.4 492 41.9
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.3e-36 156.4 221 53.4
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.4e-35 154.8 353 38.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.1e-35 154.1 685 33.3
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-34 152.5 705 31.3
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.7e-34 151.4 172 55.2
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-33 148.7 217 46.1
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 3.3e-32 144.4 154 55.2
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.2e-31 142.5 132 61.4
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.4e-30 139.0 270 40.0
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 1.9e-27 128.6 179 52.0
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 9.2e-27 126.3 187 47.6
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 2.7e-26 124.8 98 77.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.5e-26 124.4 159 53.5
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.0e-22 110.9 112 65.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.3e-20 105.9 95 57.9
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-20 105.1 170 40.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.2e-18 99.4 51 92.2
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.7e-18 98.2 671 24.7
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 8.6e-17 93.2 387 29.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 4.9e-12 77.4 74 59.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 4.1e-11 74.3 322 32.3
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.1e-10 72.0 273 27.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 4.6e-10 70.9 325 27.1
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.2e-07 62.8 323 28.2
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.1e-07 62.0 335 28.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 6.2e-07 60.5 330 25.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.4e-06 59.3 329 28.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.4e-06 59.3 106 43.4
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.8e-06 58.9 322 27.6
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.4e-06 58.5 70 42.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 6.8e-06 57.0 329 27.1
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 8.9e-06 56.6 619 22.1
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 8.9e-06 56.6 313 27.8


User provided reference genes

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