Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.1e-229 799.7 421 100.0
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 8.7e-134 481.1 434 68.0
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.4e-123 447.2 454 63.7
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.7e-105 387.1 317 72.2
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.1e-83 314.7 450 46.4
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 4.1e-83 312.8 453 47.2
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 2.3e-81 307.0 451 47.5
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 2.8e-79 300.1 444 46.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 8.3e-76 288.5 457 46.6
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 2.0e-66 257.3 440 42.0
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 8.3e-60 235.3 421 41.1
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 8.1e-55 218.8 434 39.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.6e-47 194.5 420 38.6
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.1e-47 194.1 436 37.6
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 3.8e-44 183.3 477 35.8
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 8.4e-44 182.2 416 40.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.4e-43 181.4 456 36.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 7.8e-42 175.6 424 35.6
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.6e-37 160.6 434 35.5
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.4e-37 159.8 457 35.0
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.4e-35 154.8 440 34.8
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.4e-35 154.8 460 31.7
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.9e-35 154.5 453 32.7
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.4e-35 154.1 466 33.9
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.6e-34 149.8 429 34.5
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 3.9e-33 146.7 454 35.0
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.1e-33 146.4 451 35.3
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.5e-32 144.8 438 34.9
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.9e-32 144.4 432 34.5
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.9e-32 144.4 451 33.0
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.9e-32 144.4 473 31.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 7.3e-32 142.5 458 33.8
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 7.3e-32 142.5 456 35.1
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.3e-31 141.7 455 34.7
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.3e-31 141.7 403 33.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 2.8e-31 140.6 414 33.6
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.8e-31 140.6 367 34.9
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.4e-30 138.3 452 35.4
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.1e-30 137.1 455 34.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 3.1e-30 137.1 455 30.3
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 3.1e-30 137.1 464 32.1
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.0e-30 136.7 436 32.8
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 4.0e-30 136.7 440 33.0
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.0e-30 136.7 419 33.7
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 9.0e-30 135.6 435 33.6
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.0e-29 134.4 378 34.7
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.6e-29 134.0 442 32.8
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.7e-28 131.3 423 33.8
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.9e-28 129.8 432 34.3
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.1e-27 128.6 435 34.0
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 1.4e-27 128.3 301 35.2
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-26 125.2 415 31.6
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-26 124.8 435 34.0
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 6.0e-26 122.9 372 32.3
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 7.9e-26 122.5 430 32.3
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.0e-25 122.1 447 31.3
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.0e-25 120.6 443 34.3
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 3.3e-24 117.1 498 29.9
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-23 115.2 452 28.3
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 2.8e-23 114.0 437 32.7
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.7e-23 113.6 432 32.6
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 6.2e-23 112.8 293 34.5
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.1e-22 112.1 441 31.5
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.4e-22 111.7 415 31.3
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.4e-22 111.7 435 32.2
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.8e-22 111.3 416 32.2
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 2.4e-22 110.9 437 29.5
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 5.3e-22 109.8 411 31.4
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.4e-21 107.1 437 30.0
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 5.8e-21 106.3 453 29.1
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 7.6e-21 105.9 432 33.8
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.7e-20 104.8 438 31.7
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 2.2e-20 104.4 450 28.2
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 2.2e-20 104.4 356 31.5
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 4.9e-20 103.2 332 34.9
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.1e-19 102.1 454 30.2
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.9e-19 101.3 436 31.4
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.5e-19 100.9 433 30.5
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.5e-19 100.9 467 27.6
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 9.3e-19 99.0 438 29.9
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 4.6e-18 96.7 343 31.2
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 7.9e-18 95.9 454 30.4
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.0e-17 95.5 431 29.7
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.1e-16 92.0 442 28.3
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.4e-16 89.4 442 29.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-15 88.6 431 30.4
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.6e-15 88.2 441 27.4
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 2.1e-15 87.8 328 29.3
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 3.7e-15 87.0 450 28.9
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.2e-15 86.3 261 33.7
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.4e-14 85.1 318 29.9
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 1.8e-14 84.7 463 27.9
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 2.4e-14 84.3 438 28.3
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.2e-13 82.0 178 35.4
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.0e-13 81.3 432 28.7
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 3.4e-13 80.5 447 28.2
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 3.4e-13 80.5 470 27.9
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 4.5e-13 80.1 248 32.3
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.3e-12 78.6 460 28.5
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.3e-12 78.6 440 25.2
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 3.8e-12 77.0 443 26.4
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.1e-11 75.5 262 37.4
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 2.5e-11 74.3 290 30.3
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 3.2e-11 73.9 424 25.7
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 4.2e-11 73.6 447 27.3
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 4.2e-11 73.6 431 26.9
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 9.3e-11 72.4 441 26.3
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 1.0e-09 68.9 373 26.5
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.8e-09 68.2 264 32.2
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.8e-09 68.2 453 25.4
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 5.1e-09 66.6 455 26.4
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 8.7e-09 65.9 426 27.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 8.7e-09 65.9 428 26.6
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.3e-08 63.5 230 31.3
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.3e-07 62.0 297 27.6
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.4e-06 58.5 476 26.7
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 2.4e-06 57.8 221 31.2
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.1e-06 57.4 421 26.4
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.0e-06 55.8 421 26.1
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 9.0e-06 55.8 212 30.7


User provided reference genes

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