Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 5.7e-33 143.7 73 100.0
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 1.7e-29 132.1 74 91.9
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 2.5e-28 128.3 73 89.0
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 5.7e-25 117.1 73 83.6
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 4.0e-18 94.4 73 67.1
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 1.5e-17 92.4 73 63.0
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 4.4e-17 90.9 76 65.8
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 9.8e-17 89.7 75 62.7
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 4.9e-16 87.4 73 67.1
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 8.3e-16 86.7 73 65.8
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 5.9e-14 80.5 73 58.9
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 2.5e-12 75.1 62 54.8
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 3.3e-12 74.7 74 58.1
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 7.3e-12 73.6 50 66.0
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 2.8e-11 71.6 73 52.1
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 3.6e-11 71.2 70 52.9
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 3.6e-11 71.2 56 57.1
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 6.1e-11 70.5 47 66.0
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 1.4e-10 69.3 50 62.0
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 1.8e-10 68.9 50 62.0
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 1.8e-10 68.9 50 60.0
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.3e-10 68.6 75 52.0
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 3.1e-10 68.2 53 64.2
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 3.1e-10 68.2 50 58.0
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 4.0e-10 67.8 50 58.0
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 5.2e-10 67.4 62 56.5
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 6.8e-10 67.0 53 64.2
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 8.9e-10 66.6 56 53.6
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 8.9e-10 66.6 56 53.6
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 8.9e-10 66.6 56 53.6
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 8.9e-10 66.6 50 60.0
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 1.2e-09 66.2 73 45.2
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 1.2e-09 66.2 62 46.8
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 1.5e-09 65.9 71 47.9
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 2.6e-09 65.1 66 45.5
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 2.6e-09 65.1 47 61.7
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 2.6e-09 65.1 50 62.0
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 4.4e-09 64.3 49 63.3
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 7.5e-09 63.5 67 49.3
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 7.5e-09 63.5 53 58.5
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 7.5e-09 63.5 69 50.7
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 7.5e-09 63.5 71 52.1
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 9.8e-09 63.2 67 49.3
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 1.3e-08 62.8 66 48.5
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 1.3e-08 62.8 69 52.2
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.7e-08 62.4 69 52.2
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 2.2e-08 62.0 69 50.7
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 2.2e-08 62.0 66 45.5
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 3.7e-08 61.2 68 51.5
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 4.9e-08 60.8 69 52.2
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 1.9e-07 58.9 48 58.3
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 2.4e-07 58.5 43 58.1
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 5.4e-07 57.4 50 56.0
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 9.2e-07 56.6 41 65.9
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 1.2e-06 56.2 47 57.4
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 1.2e-06 56.2 47 59.6
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 2.0e-06 55.5 47 53.2
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 3.5e-06 54.7 48 54.2


User provided reference genes

Program Settings