Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.5e-287 991.5 528 100.0
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.0e-224 781.9 528 79.2
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.2e-212 743.4 535 76.8
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.5e-207 725.7 530 76.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.4e-197 693.3 527 72.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 8.2e-190 667.5 527 69.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.0e-184 650.6 528 68.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 5.3e-181 638.3 528 68.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.9e-179 632.5 533 67.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.3e-176 622.9 528 66.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 3.7e-174 615.5 528 66.1
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 5.2e-168 595.1 528 64.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 8.9e-144 514.6 553 56.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.4e-141 507.3 545 56.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.1e-140 503.4 548 55.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.9e-133 480.3 556 54.9
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-127 461.1 539 52.5
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 7.1e-125 451.8 552 50.9
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 9.3e-125 451.4 542 52.4
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.5e-124 449.5 544 53.3
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-122 444.5 546 53.7
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.5e-122 444.1 546 52.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 3.3e-122 443.0 547 52.5
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 4.3e-122 442.6 538 52.6
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 8.1e-121 438.3 559 50.4
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 6.9e-120 435.3 577 51.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.5e-119 434.1 540 51.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.7e-118 430.6 547 50.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.2e-118 430.3 549 50.8
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.2e-118 430.3 549 50.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.9e-118 429.9 540 50.6
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.8e-118 429.5 547 50.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.8e-118 429.5 541 51.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.4e-117 426.8 597 46.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.4e-117 426.8 550 49.8
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 3.2e-117 426.4 561 51.2
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 4.2e-117 426.0 539 50.3
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.2e-117 426.0 541 51.2
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 5.6e-114 415.6 550 49.1
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 7.4e-114 415.2 579 49.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-113 412.9 544 48.5
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 4.8e-113 412.5 544 48.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 6.2e-113 412.1 584 48.1
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.6e-111 406.8 544 48.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 7.6e-111 405.2 538 48.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.7e-110 404.1 462 55.6
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 4.2e-109 399.4 507 52.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-108 397.9 547 47.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.0e-107 394.8 484 52.5
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.3e-107 394.4 594 48.1
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.0e-107 393.3 579 45.8
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 5.1e-107 392.5 294 70.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.1e-104 383.3 575 48.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 4.0e-104 382.9 563 46.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-103 380.9 552 45.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.0e-103 380.6 532 47.4
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.6e-103 380.2 539 47.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.3e-102 377.9 542 46.9
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 4.9e-102 375.9 559 45.4
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.4e-101 374.4 545 46.2
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.2e-100 371.3 547 45.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.1e-100 370.5 548 44.9
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.1e-100 370.5 548 44.9
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.5e-100 369.8 571 47.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.1e-98 364.8 548 46.2
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.9e-98 364.0 547 47.0
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 1.1e-96 358.2 538 44.8
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.4e-96 357.1 549 44.1
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.1e-96 356.7 537 44.7
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.0e-96 355.1 533 45.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 9.0e-96 355.1 585 43.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.2e-95 354.8 540 46.1
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.0e-95 354.0 533 45.0
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.0e-94 351.7 533 45.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.7e-94 350.9 536 45.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 8.5e-94 348.6 536 44.4
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.2e-93 346.3 543 44.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 5.5e-93 345.9 543 44.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 5.5e-93 345.9 543 44.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.7e-92 343.6 543 43.6
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.6e-92 343.2 541 43.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.0e-91 341.7 650 39.8
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.4e-91 341.3 544 44.1
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.8e-91 340.9 531 45.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.8e-91 340.9 560 41.8
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.0e-91 340.1 553 43.6
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 8.8e-91 338.6 543 46.0
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-89 334.3 531 44.1
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.7e-89 333.2 566 41.2
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 4.1e-88 329.7 540 41.9
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 5.9e-87 325.9 541 42.0
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.9e-86 323.6 445 46.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.4e-85 321.2 471 47.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.3e-83 313.9 466 44.2
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.0e-83 313.5 576 40.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.4e-82 308.9 544 45.0
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 6.3e-81 305.8 314 57.3
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 3.1e-80 303.5 526 41.3
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.5e-79 300.1 391 46.3
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.5e-79 299.7 553 40.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 5.5e-77 292.7 524 41.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 5.5e-77 292.7 524 41.6
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.1e-76 290.8 483 44.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 5.2e-75 286.2 545 40.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 6.7e-75 285.8 560 39.3
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.0e-71 274.2 301 52.5
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.1e-69 268.5 536 38.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 8.3e-65 252.3 442 45.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.7e-63 247.3 547 38.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 4.5e-63 246.5 443 45.6
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.9e-62 243.8 558 36.2
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.5e-61 240.7 379 44.6
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.7e-49 200.3 400 40.5
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.7e-47 194.1 484 35.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 3.1e-43 180.6 334 38.6
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 8.3e-41 172.6 586 30.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 6.6e-38 162.9 578 31.3
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 6.2e-36 156.4 519 31.0
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 8.9e-35 152.5 268 40.3
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.0e-30 137.5 434 32.3
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 7.3e-29 132.9 246 42.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.9e-22 110.5 181 35.9
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 6.6e-22 109.8 175 51.4
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 9.6e-21 105.9 231 35.1
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 4.4e-18 97.1 309 32.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 5.8e-18 96.7 216 39.4
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.2e-17 94.7 127 55.9
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 8.4e-17 92.8 157 32.5
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.7e-15 87.8 156 41.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 3.0e-14 84.3 200 34.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 65 56.9
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.1e-11 75.9 98 49.0
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.5e-10 72.0 100 44.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.2e-09 68.2 124 37.9
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 4.6e-07 60.5 256 29.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.0e-06 59.3 262 28.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 3.0e-06 57.8 37 70.3


User provided reference genes

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