Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g075650 Medicago truncatula HOM05D006117 ORTHO05D007996 2.8e-35 151.4 74 100.0
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 3.1e-18 94.7 49 93.9
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 5.3e-18 94.0 49 93.9
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 1.3e-16 89.4 49 87.8
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 3.8e-16 87.8 49 85.7
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 6.4e-16 87.0 49 85.7
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 1.9e-15 85.5 49 83.7
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 2.4e-15 85.1 49 83.7
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 3.2e-15 84.7 49 83.7
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 7.1e-15 83.6 49 83.7
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 7.1e-15 83.6 49 79.6
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 7.1e-15 83.6 49 81.6
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 7.1e-15 83.6 49 83.7
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 9.3e-15 83.2 49 81.6
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 9.3e-15 83.2 49 81.6
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 1.6e-14 82.4 49 77.6
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 2.7e-14 81.6 49 79.6
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 3.5e-14 81.3 49 79.6
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.5e-14 81.3 49 79.6
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.5e-14 81.3 49 79.6
Lalb_Chr08g0245251 Lupinus albus HOM05D006117 ORTHO05D007996 3.5e-14 81.3 49 79.6
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 3.5e-14 81.3 49 79.6
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 4.6e-14 80.9 49 79.6
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 6.0e-14 80.5 49 79.6
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 6.0e-14 80.5 49 77.6
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 1.0e-13 79.7 49 77.6
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 1.3e-13 79.3 49 75.5
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 73.5
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 75.5
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 77.6
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 1.8e-13 79.0 49 75.5
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 2.3e-13 78.6 49 75.5
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 3.0e-13 78.2 49 75.5
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 3.0e-13 78.2 49 77.6
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 3.0e-13 78.2 45 82.2
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 3.0e-13 78.2 45 82.2
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 3.9e-13 77.8 49 77.6
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.9e-13 77.8 49 75.5
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 3.9e-13 77.8 49 75.5
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 3.9e-13 77.8 49 73.5
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 5.1e-13 77.4 49 71.4
vmacro21425 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 5.1e-13 77.4 49 77.6
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 6.7e-13 77.0 49 75.5
Sc15g0005440 Simmondsia chinensis HOM05D006117 ORTHO05D007996 6.7e-13 77.0 49 73.5
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 6.7e-13 77.0 49 73.5
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 8.7e-13 76.6 49 75.5
Sopen05g029120 Solanum pennellii HOM05D006117 ORTHO05D007996 8.7e-13 76.6 49 75.5
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 1.1e-12 76.3 49 71.4
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 1.5e-12 75.9 49 73.5
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 1.5e-12 75.9 49 73.5
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 1.5e-12 75.9 49 73.5
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 77.6
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 75.5
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 71.4
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 71.4
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 71.4
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 1.9e-12 75.5 49 73.5
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 2.5e-12 75.1 49 75.5
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 2.5e-12 75.1 49 73.5
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 2.5e-12 75.1 49 75.5
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 5.6e-12 73.9 49 67.3
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 7.4e-12 73.6 49 69.4
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 9.6e-12 73.2 49 71.4
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 1.6e-11 72.4 49 67.3
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 1.6e-11 72.4 49 67.3
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 1.6e-11 72.4 49 69.4
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 2.8e-11 71.6 49 67.3
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 4.8e-11 70.9 49 67.3
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 4.8e-11 70.9 49 67.3
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 1.1e-10 69.7 49 65.3
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 1.1e-10 69.7 49 67.3
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 1.4e-10 69.3 48 66.7
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 1.4e-10 69.3 49 67.3
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 1.4e-10 69.3 49 63.3
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 5.3e-10 67.4 49 61.2
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 9.0e-10 66.6 49 61.2
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 1.2e-09 66.2 49 61.2
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 1.2e-09 66.2 49 61.2
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 1.2e-09 66.2 49 61.2
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.5e-09 65.9 49 61.2
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 1.5e-09 65.9 49 61.2
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 1.5e-09 65.9 49 63.3
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 3.4e-09 64.7 49 59.2
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 4.5e-09 64.3 49 55.1
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 5.8e-09 63.9 49 61.2
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 5.8e-09 63.9 49 61.2
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 7.6e-09 63.5 49 63.3
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 1.0e-08 63.2 49 63.3
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 2.9e-08 61.6 49 59.2
ATR0739G041 Amborella trichopoda HOM05D006117 ORTHO05D007996 3.2e-07 58.2 46 67.4
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 1.2e-06 56.2 44 61.4
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 1.6e-06 55.8 49 57.1
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 3.5e-06 54.7 49 46.9


User provided reference genes

Program Settings