Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 8.3e-279 963.0 465 100.0
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.1e-258 895.2 468 90.8
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.3e-252 875.9 469 90.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.7e-237 825.1 472 84.7
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.5e-232 807.7 476 81.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.1e-229 798.9 475 82.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 6.1e-229 797.3 476 81.1
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.0e-228 796.6 478 81.4
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.1e-225 785.0 477 81.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 5.7e-211 737.6 474 74.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.9e-208 727.6 478 73.8
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.7e-207 726.1 475 75.8
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-207 725.3 478 75.5
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.1e-206 723.4 478 71.3
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.2e-206 721.5 469 73.6
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.2e-205 719.9 477 73.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 6.1e-205 717.6 474 72.4
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.4e-204 716.5 471 72.0
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.5e-203 713.0 478 72.6
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.0e-203 712.6 476 72.5
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.6e-203 712.2 474 71.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.5e-203 710.7 470 73.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.3e-202 709.9 476 72.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.8e-202 708.8 480 71.9
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.7e-202 708.4 469 72.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 3.7e-202 708.4 469 71.9
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.3e-202 707.6 473 71.0
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.3e-202 707.2 470 72.8
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 3.1e-201 705.3 480 70.4
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.2e-200 703.4 476 72.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.6e-200 703.0 474 71.1
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.5e-200 701.8 477 70.6
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.5e-200 701.4 475 71.2
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.0e-199 700.3 476 72.1
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-199 699.9 469 71.6
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.5e-198 696.4 477 71.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.5e-198 695.7 475 72.8
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.6e-197 693.0 477 72.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 6.1e-197 691.0 472 69.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.8e-196 689.5 472 71.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.3e-196 689.1 475 70.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 6.8e-196 687.6 475 71.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 5.7e-195 684.5 471 69.0
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.8e-195 683.7 473 68.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 6.3e-194 681.0 524 65.3
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.8e-193 679.5 470 68.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.1e-193 678.7 473 67.7
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.2e-192 676.8 482 67.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.0e-192 676.0 482 67.6
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 5.9e-192 674.5 477 67.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.0e-191 673.7 474 68.1
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.3e-191 673.3 473 68.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.7e-191 672.9 517 63.4
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.7e-191 672.9 478 67.6
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.7e-191 672.9 498 65.7
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 5.0e-191 671.4 477 66.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 8.6e-191 670.6 473 67.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-190 670.2 483 67.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.5e-190 669.1 479 67.8
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 5.5e-190 667.9 515 63.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.6e-189 665.2 511 66.1
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.8e-188 662.9 515 62.9
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 2.3e-188 662.5 515 62.9
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.0e-187 659.4 509 65.8
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.6e-187 659.1 473 66.8
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.4e-187 658.3 494 67.2
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.3e-186 656.8 484 66.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-184 649.4 536 61.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.9e-184 647.9 515 62.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.7e-183 646.4 541 60.3
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.7e-183 646.4 516 61.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.9e-183 645.2 498 63.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 5.0e-183 644.8 468 66.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.4e-180 636.7 479 64.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.8e-180 636.3 478 65.1
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.1e-180 635.6 432 70.1
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.8e-180 634.4 478 64.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 8.9e-180 634.0 480 64.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.5e-179 633.3 472 64.0
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.4e-179 631.7 430 70.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.9e-178 628.2 479 64.9
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.4e-177 625.9 480 64.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.0e-177 624.4 476 64.3
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-176 621.7 474 65.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 8.6e-175 617.5 469 63.3
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.5e-174 615.9 473 64.5
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.8e-173 612.5 482 63.7
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 8.1e-173 610.9 434 68.0
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 3.1e-172 609.0 432 66.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.1e-172 609.0 468 62.6
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.8e-172 607.8 482 62.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 8.9e-172 607.4 476 62.8
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.5e-171 606.7 474 63.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.8e-171 604.7 476 62.4
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.5e-171 604.4 468 62.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.3e-170 600.9 475 62.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 8.3e-170 600.9 475 62.9
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 3.2e-169 599.0 475 62.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 4.1e-169 598.6 468 61.1
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-168 597.0 468 60.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.7e-168 595.9 476 62.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.5e-168 595.5 468 60.5
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.5e-168 595.5 468 60.5
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 2.3e-167 592.8 474 61.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-165 587.0 475 61.3
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-165 586.6 466 60.9
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.6e-165 586.6 468 60.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.6e-165 586.6 476 59.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 3.6e-165 585.5 477 61.8
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.7e-165 585.1 474 60.5
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.1e-161 573.9 392 71.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.5e-160 568.9 386 71.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.6e-157 560.1 398 67.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.8e-156 556.6 382 69.9
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 8.9e-156 554.3 404 68.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 8.9e-156 554.3 494 55.5
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 6.4e-154 548.1 430 63.3
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.2e-153 545.4 494 54.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.7e-152 542.7 386 68.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.3e-150 535.8 290 82.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-146 523.5 510 52.0
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.1e-145 520.8 435 62.1
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.2e-144 517.3 350 72.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.1e-142 510.8 440 60.2
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.6e-142 508.4 453 58.9
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 7.3e-142 508.1 427 56.7
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.8e-141 506.1 282 79.8
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.0e-139 500.0 457 54.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.4e-137 493.8 287 77.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.4e-137 493.8 471 53.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.1e-132 477.6 406 60.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.0e-131 473.4 321 66.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.6e-125 453.8 290 69.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.2e-117 426.8 286 67.5
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.4e-115 419.5 383 54.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.9e-111 406.0 312 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.4e-108 397.5 290 62.1
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.2e-104 384.4 469 42.9
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 2.1e-104 383.6 304 58.6
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.0e-98 362.5 293 64.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.7e-96 356.7 416 44.0
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.1e-81 308.1 372 47.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.0e-79 300.1 294 55.4
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 8.9e-71 271.9 205 63.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.0e-66 256.9 438 39.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-54 217.6 179 60.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 6.6e-50 202.6 187 58.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-41 174.5 95 80.0
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 4.3e-41 173.3 144 57.6
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 4.3e-41 173.3 144 57.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-40 171.4 93 79.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.6e-40 171.4 187 54.0
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.2e-40 169.5 154 55.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-39 167.5 95 75.8
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.3e-37 161.8 127 54.3
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.1e-36 158.7 180 45.6
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-35 155.2 86 81.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.2e-35 155.2 86 81.4
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.1e-35 154.5 107 69.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.8e-32 143.3 116 62.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.9e-29 133.3 178 42.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.0e-26 124.0 179 45.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 9.6e-25 119.0 151 47.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.6e-24 118.2 135 48.1
Psat5g113520 Pisum sativum HOM05D004150 ORTHO05D329029 1.4e-20 105.1 91 65.9
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 9.3e-20 102.4 72 69.4
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.8e-13 80.5 45 77.8
VMungo1309G0651 Vigna mungo HOM05D004150 ORTHO05D435762 1.4e-07 62.0 58 60.3


User provided reference genes

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