Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g075270 Medicago truncatula HOM05D000737 ORTHO05D000581 4.9e-47 190.7 88 100.0
Medtr2g075300 Medicago truncatula HOM05D000737 ORTHO05D000581 5.3e-17 90.9 44 88.6
Sed0020228 Sechium edule HOM05D000737 ORTHO05D000581 6.9e-09 63.9 55 47.3
Psat5g234600 Pisum sativum HOM05D000737 ORTHO05D000581 9.1e-09 63.5 56 48.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.2e-08 63.2 53 52.8
Duzib150G1062 Durio zibethinus HOM05D000737 ORTHO05D000581 1.2e-08 63.2 53 52.8
EL10Ac1g01673 Beta vulgaris HOM05D000737 ORTHO05D000581 1.5e-08 62.8 55 43.6
TWI75G1260 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 1.5e-08 62.8 42 57.1
vmacro17467 Vaccinium macrocarpon HOM05D000737 ORTHO05D000581 2.0e-08 62.4 41 56.1
Atru.chr12.924 Acer truncatum HOM05D000737 ORTHO05D000581 3.4e-08 61.6 41 56.1
Aqoxy7G04123 Aquilegia oxysepala HOM05D000737 ORTHO05D000581 5.9e-08 60.8 51 49.0
Gohir.D05G087100 Gossypium hirsutum HOM05D000737 ORTHO05D000581 5.9e-08 60.8 53 49.1
Gorai.009G088900 Gossypium raimondii HOM05D000737 ORTHO05D000581 5.9e-08 60.8 53 49.1
Hund03610 Selenicereus undatus HOM05D000737 ORTHO05D000581 5.9e-08 60.8 54 50.0
TWI63G0598 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 5.9e-08 60.8 42 54.8
CSS0030400 Camellia sinensis var. sinensis HOM05D000737 ORTHO05D000581 7.7e-08 60.5 41 56.1
Atru.chr3.3433 Acer truncatum HOM05D000737 ORTHO05D000581 1.0e-07 60.1 43 51.2
Cc01_g04320 Coffea canephora HOM05D000737 ORTHO05D000581 1.0e-07 60.1 41 58.5
Migut.N02532 Erythranthe guttata HOM05D000737 ORTHO05D000581 1.0e-07 60.1 42 52.4
Medtr2g084535 Medicago truncatula HOM05D000737 ORTHO05D000581 1.0e-07 60.1 37 62.2
QL04p040051 Quercus lobata HOM05D000737 ORTHO05D000581 1.0e-07 60.1 65 44.6
GSVIVG01031436001 Vitis vinifera HOM05D000737 ORTHO05D000581 1.0e-07 60.1 42 52.4
Ciclev10030241m.g Citrus clementina HOM05D000737 ORTHO05D000581 1.3e-07 59.7 41 61.0
CsaV3_6G014500 Cucumis sativus L. HOM05D000737 ORTHO05D000581 1.3e-07 59.7 55 47.3
AL6G34000 Arabidopsis lyrata HOM05D000737 ORTHO05D000581 1.7e-07 59.3 44 54.5
Cfa010127 Carpinus fangiana HOM05D000737 ORTHO05D000581 2.2e-07 58.9 44 56.8
Cc01_g10080 Coffea canephora HOM05D000737 ORTHO05D000581 2.2e-07 58.9 55 45.5
GSVIVG01005022001 Vitis vinifera HOM05D000737 ORTHO05D000581 2.2e-07 58.9 40 52.5
arahy.Tifrunner.gnm1.ann1.0G5WTH Arachis hypogaea HOM05D000737 ORTHO05D000581 2.9e-07 58.5 37 59.5
CiPaw.13G143500 Carya illinoinensis HOM05D000737 ORTHO05D000581 2.9e-07 58.5 60 45.0
Dinv19169 Davidia involucrata HOM05D000737 ORTHO05D000581 2.9e-07 58.5 41 56.1
Lj2C999T6 Lonicera japonica HOM05D000737 ORTHO05D000581 2.9e-07 58.5 41 58.5
Nn2g13912 Nelumbo nucifera HOM05D000737 ORTHO05D000581 2.9e-07 58.5 50 50.0
Thecc.09G295300 Theobroma cacao HOM05D000737 ORTHO05D000581 2.9e-07 58.5 40 55.0
QL04p040172 Quercus lobata HOM05D000737 ORTHO05D000581 3.8e-07 58.2 53 45.3
AUR62032978 Chenopodium quinoa HOM05D000737 ORTHO05D000581 5.0e-07 57.8 53 43.4
Eucgr.J00219 Eucalyptus grandis HOM05D000737 ORTHO05D000581 5.0e-07 57.8 40 55.0
Eucgr.J00405 Eucalyptus grandis HOM05D000737 ORTHO05D000581 5.0e-07 57.8 53 47.2
Gohir.D09G087200 Gossypium hirsutum HOM05D000737 ORTHO05D000581 5.0e-07 57.8 41 53.7
Gorai.006G103600 Gossypium raimondii HOM05D000737 ORTHO05D000581 5.0e-07 57.8 41 53.7
Hund19707 Selenicereus undatus HOM05D000737 ORTHO05D000581 5.0e-07 57.8 54 42.6
Solyc11g066600.2 Solanum lycopersicum HOM05D000737 ORTHO05D000581 5.0e-07 57.8 42 52.4
vmacro17468 Vaccinium macrocarpon HOM05D000737 ORTHO05D000581 5.0e-07 57.8 50 48.0
GSVIVG01031435001 Vitis vinifera HOM05D000737 ORTHO05D000581 5.0e-07 57.8 42 50.0
Actinidia24161 Actinidia chinensis HOM05D000737 ORTHO05D000581 6.5e-07 57.4 41 56.1
Manes.10G053700 Manihot esculenta HOM05D000737 ORTHO05D000581 6.5e-07 57.4 40 55.0
Potri.010G232300 Populus trichocarpa HOM05D000737 ORTHO05D000581 6.5e-07 57.4 53 45.3
PGR119G2204 Punica granatum HOM05D000737 ORTHO05D000581 6.5e-07 57.4 40 57.5
QL01p014523 Quercus lobata HOM05D000737 ORTHO05D000581 6.5e-07 57.4 41 56.1
Rhsim13G0102800 Rhododendron simsii HOM05D000737 ORTHO05D000581 6.5e-07 57.4 41 51.2
TAR633G0035 Trochodendron aralioides HOM05D000737 ORTHO05D000581 6.5e-07 57.4 51 51.0
GSVIVG01031440001 Vitis vinifera HOM05D000737 ORTHO05D000581 6.5e-07 57.4 64 40.6
Cfa010123 Carpinus fangiana HOM05D000737 ORTHO05D000581 8.5e-07 57.0 41 56.1
CiPaw.13G143300 Carya illinoinensis HOM05D000737 ORTHO05D000581 8.5e-07 57.0 60 43.3
Ca_01697_v3 Cicer arietinum L. HOM05D000737 ORTHO05D000581 8.5e-07 57.0 53 41.5
Lalb_Chr22g0350481 Lupinus albus HOM05D000737 ORTHO05D000581 8.5e-07 57.0 40 52.5
Rhsim13G0102700 Rhododendron simsii HOM05D000737 ORTHO05D000581 8.5e-07 57.0 38 55.3
SEGI_05569 Sequoiadendron giganteum HOM05D000737 ORTHO05D000581 8.5e-07 57.0 39 64.1
TPR.G13143 Trifolium pratense HOM05D000737 ORTHO05D000581 8.5e-07 57.0 42 52.4
COL.COLO4_19246 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.1e-06 56.6 38 55.3
CsaV3_6G014510 Cucumis sativus L. HOM05D000737 ORTHO05D000581 1.1e-06 56.6 55 45.5
CsaV3_6G014520 Cucumis sativus L. HOM05D000737 ORTHO05D000581 1.1e-06 56.6 40 55.0
Glyma.01G065400 Glycine max HOM05D000737 ORTHO05D000581 1.1e-06 56.6 54 46.3
Lj1C216T1 Lonicera japonica HOM05D000737 ORTHO05D000581 1.1e-06 56.6 41 53.7
Prupe.6G115100 Prunus persica HOM05D000737 ORTHO05D000581 1.1e-06 56.6 53 47.2
RcHm_v2.0_Chr5g0052471 Rosa chinensis HOM05D000737 ORTHO05D000581 1.1e-06 56.6 44 52.3
Sabra10G0180100 Salix brachista HOM05D000737 ORTHO05D000581 1.1e-06 56.6 53 45.3
arahy.Tifrunner.gnm1.ann1.DNCM1Q Arachis hypogaea HOM05D000737 ORTHO05D000581 1.4e-06 56.2 37 56.8
CSS0013799 Camellia sinensis var. sinensis HOM05D000737 ORTHO05D000581 1.4e-06 56.2 41 51.2
CAN.G546.70 Capsicum annuum HOM05D000737 ORTHO05D000581 1.4e-06 56.2 41 53.7
MELO3C021475.2 Cucumis melo HOM05D000737 ORTHO05D000581 1.4e-06 56.2 41 56.1
Dinv12562 Davidia involucrata HOM05D000737 ORTHO05D000581 1.4e-06 56.2 37 59.5
CSS0032643 Camellia sinensis var. sinensis HOM05D000737 ORTHO05D000581 1.9e-06 55.8 41 51.2
Ciclev10030021m.g Citrus clementina HOM05D000737 ORTHO05D000581 1.9e-06 55.8 41 48.8
ECA248G3481 Erigeron canadensis HOM05D000737 ORTHO05D000581 1.9e-06 55.8 38 57.9
Manes.11G154600 Manihot esculenta HOM05D000737 ORTHO05D000581 1.9e-06 55.8 43 51.2
QL03p064673 Quercus lobata HOM05D000737 ORTHO05D000581 1.9e-06 55.8 41 53.7
TWI38G0685 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 1.9e-06 55.8 43 53.5
TWI79G0548 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 1.9e-06 55.8 40 52.5
vmacro03240 Vaccinium macrocarpon HOM05D000737 ORTHO05D000581 1.9e-06 55.8 41 48.8
arahy.Tifrunner.gnm1.ann1.KW0BBJ Arachis hypogaea HOM05D000737 ORTHO05D000581 2.5e-06 55.5 37 54.1
Eucgr.J00172 Eucalyptus grandis HOM05D000737 ORTHO05D000581 2.5e-06 55.5 40 55.0
Nn6g35158 Nelumbo nucifera HOM05D000737 ORTHO05D000581 2.5e-06 55.5 53 45.3
QL01p014367 Quercus lobata HOM05D000737 ORTHO05D000581 2.5e-06 55.5 41 53.7
Solyc11g066590.2 Solanum lycopersicum HOM05D000737 ORTHO05D000581 2.5e-06 55.5 42 50.0
Sopen11g026320 Solanum pennellii HOM05D000737 ORTHO05D000581 2.5e-06 55.5 42 50.0
Ciclev10028272m.g Citrus clementina HOM05D000737 ORTHO05D000581 3.2e-06 55.1 42 54.8
MELO3C021473.2 Cucumis melo HOM05D000737 ORTHO05D000581 3.2e-06 55.1 55 41.8
DCAR_017782 Daucus carota HOM05D000737 ORTHO05D000581 3.2e-06 55.1 42 52.4
Lsat_1_v5_gn_1_65200 Lactuca sativa HOM05D000737 ORTHO05D000581 3.2e-06 55.1 51 43.1
Lj3g0014464 Lotus japonicus HOM05D000737 ORTHO05D000581 3.2e-06 55.1 50 54.0
Nitab4.5_0000442g0010 Nicotiana tabacum HOM05D000737 ORTHO05D000581 3.2e-06 55.1 43 46.5
Potri.009G002200 Populus trichocarpa HOM05D000737 ORTHO05D000581 3.2e-06 55.1 42 50.0
PGR031G2864 Punica granatum HOM05D000737 ORTHO05D000581 3.2e-06 55.1 57 45.6
PGR119G0961 Punica granatum HOM05D000737 ORTHO05D000581 3.2e-06 55.1 53 47.2
QL03p064669 Quercus lobata HOM05D000737 ORTHO05D000581 3.2e-06 55.1 41 53.7
TPR.G32373 Trifolium pratense HOM05D000737 ORTHO05D000581 3.2e-06 55.1 38 52.6
TWI56G0558 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 3.2e-06 55.1 42 47.6
Aqoxy6G02969 Aquilegia oxysepala HOM05D000737 ORTHO05D000581 4.2e-06 54.7 41 53.7
CARHR190680 Cardamine hirsuta HOM05D000737 ORTHO05D000581 4.2e-06 54.7 63 41.3
Dinv00575 Davidia involucrata HOM05D000737 ORTHO05D000581 4.2e-06 54.7 53 43.4
Dinv29394 Davidia involucrata HOM05D000737 ORTHO05D000581 4.2e-06 54.7 52 48.1
RcHm_v2.0_Chr1g0342691 Rosa chinensis HOM05D000737 ORTHO05D000581 4.2e-06 54.7 42 47.6
Sopen11g026330 Solanum pennellii HOM05D000737 ORTHO05D000581 4.2e-06 54.7 38 55.3
SGA_v2.0_scaffold83G26436 Striga asiatica HOM05D000737 ORTHO05D000581 4.2e-06 54.7 39 51.3
SGA_v2.0_scaffold83G26466 Striga asiatica HOM05D000737 ORTHO05D000581 4.2e-06 54.7 42 50.0
vmacro03243 Vaccinium macrocarpon HOM05D000737 ORTHO05D000581 4.2e-06 54.7 40 52.5
VMungo1080G1430 Vigna mungo HOM05D000737 ORTHO05D000581 4.2e-06 54.7 53 41.5
MSTRG.17748 Avicennia marina HOM05D000737 ORTHO05D000581 5.5e-06 54.3 40 47.5
CARHR190710 Cardamine hirsuta HOM05D000737 ORTHO05D000581 5.5e-06 54.3 52 42.3
ClCG02G021730 Citrullus lanatus HOM05D000737 ORTHO05D000581 5.5e-06 54.3 55 43.6
Eucgr.J00403 Eucalyptus grandis HOM05D000737 ORTHO05D000581 5.5e-06 54.3 53 41.5
Gohir.D09G086800 Gossypium hirsutum HOM05D000737 ORTHO05D000581 5.5e-06 54.3 41 53.7
Gohir.D09G087000 Gossypium hirsutum HOM05D000737 ORTHO05D000581 5.5e-06 54.3 41 53.7
Nn6g35159 Nelumbo nucifera HOM05D000737 ORTHO05D000581 5.5e-06 54.3 41 43.9
Phvul.003G038000 Phaseolus vulgaris HOM05D000737 ORTHO05D000581 5.5e-06 54.3 54 42.6
QL04p040089 Quercus lobata HOM05D000737 ORTHO05D000581 5.5e-06 54.3 41 46.3
unitig_22.g5656 Utricularia gibba HOM05D000737 ORTHO05D000581 5.5e-06 54.3 39 56.4
Atru.chr3.3449_Atru.chr3.3453_Atru.chr3.3455 Acer truncatum HOM05D000737 ORTHO05D000581 7.2e-06 53.9 54 46.3
Duzib170G0580 Durio zibethinus HOM05D000737 ORTHO05D000581 7.2e-06 53.9 41 46.3
FvH4_3g28620 Fragaria vesca HOM05D000737 ORTHO05D000581 7.2e-06 53.9 40 52.5
FAN11G3641 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 40 52.5
FAN16G1018 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 40 52.5
FAN16G2479 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 54 46.3
FAN21G0291 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 54 46.3
FAN21G1632 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 40 52.5
FAN25G2278 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 53 47.2
FAN25G2431 Fragaria x ananassa HOM05D000737 ORTHO05D000581 7.2e-06 53.9 40 52.5
Gorai.006G103400 Gossypium raimondii HOM05D000737 ORTHO05D000581 7.2e-06 53.9 41 53.7
Nn2g12630 Nelumbo nucifera HOM05D000737 ORTHO05D000581 7.2e-06 53.9 44 45.5
QL04p040111 Quercus lobata HOM05D000737 ORTHO05D000581 7.2e-06 53.9 44 45.5
unitig_22.g5655 Utricularia gibba HOM05D000737 ORTHO05D000581 7.2e-06 53.9 42 52.4
arahy.Tifrunner.gnm1.ann1.K2M25G Arachis hypogaea HOM05D000737 ORTHO05D000581 9.4e-06 53.5 53 39.6
arahy.Tifrunner.gnm1.ann1.ZFQ2FP Arachis hypogaea HOM05D000737 ORTHO05D000581 9.4e-06 53.5 53 39.6
CANSAT35G1239 Cannabis sativa HOM05D000737 ORTHO05D000581 9.4e-06 53.5 39 53.8
Cfa010122 Carpinus fangiana HOM05D000737 ORTHO05D000581 9.4e-06 53.5 60 43.3
Ciclev10028401m.g Citrus clementina HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 46.3
Duzib187G1794 Durio zibethinus HOM05D000737 ORTHO05D000581 9.4e-06 53.5 42 50.0
Eucgr.J00406 Eucalyptus grandis HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 48.8
FAN21G3834 Fragaria x ananassa HOM05D000737 ORTHO05D000581 9.4e-06 53.5 54 44.4
Medtr4g097590 Medicago truncatula HOM05D000737 ORTHO05D000581 9.4e-06 53.5 57 42.1
Psat4g080440 Pisum sativum HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 51.2
Potri.018G018500 Populus trichocarpa HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 48.8
QL01p014379 Quercus lobata HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 51.2
Rhsim12G0167100 Rhododendron simsii HOM05D000737 ORTHO05D000581 9.4e-06 53.5 41 46.3


User provided reference genes

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