Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.8e-176 622.5 310 100.0
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.3e-155 552.4 310 88.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.3e-155 552.4 310 88.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.3e-142 510.0 281 89.3
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.4e-141 506.5 310 82.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.9e-141 506.1 302 82.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 4.1e-141 505.0 302 82.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 4.7e-137 491.5 303 79.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 4.4e-135 485.0 304 78.3
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.9e-133 479.6 307 78.5
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 4.8e-121 438.3 307 72.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 4.5e-119 431.8 311 68.5
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 5.8e-119 431.4 310 67.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 2.2e-118 429.5 317 68.1
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-117 426.8 314 67.5
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.9e-117 426.4 310 67.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.4e-117 426.0 311 67.2
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.2e-116 423.7 312 67.3
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.1e-116 422.9 310 66.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 6.0e-116 421.4 308 67.2
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.3e-115 420.2 310 65.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.3e-115 419.5 312 65.7
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.9e-115 418.7 308 66.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.9e-115 418.7 314 68.5
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 6.7e-115 417.9 311 67.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 8.7e-115 417.5 308 67.5
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 8.7e-115 417.5 307 67.8
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.9e-114 416.4 321 65.1
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.5e-114 416.0 309 67.0
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 7.4e-114 414.5 309 67.3
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 7.4e-114 414.5 314 65.6
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 9.6e-114 414.1 311 66.9
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 9.6e-114 414.1 314 67.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 3.7e-113 412.1 310 65.2
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 8.2e-113 411.0 310 64.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 8.2e-113 411.0 311 65.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.4e-112 410.2 307 66.8
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.8e-112 409.8 315 64.4
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.4e-112 409.5 310 66.1
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.4e-112 409.5 334 63.2
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.0e-112 408.7 318 63.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.3e-112 408.3 315 64.4
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 5.3e-112 408.3 309 65.7
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 9.0e-112 407.5 312 66.3
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 9.0e-112 407.5 314 66.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.5e-111 406.8 313 63.9
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.0e-111 406.4 313 64.2
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.2e-110 402.9 311 64.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.2e-110 402.9 282 70.2
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.5e-110 401.4 310 62.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.4e-110 401.0 330 61.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 4.2e-109 398.7 301 64.5
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 7.1e-109 397.9 309 63.4
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 2.1e-108 396.4 314 62.7
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.0e-107 392.5 307 64.2
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 3.0e-107 392.5 313 62.9
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.9e-107 392.1 313 62.6
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 5.1e-107 391.7 313 62.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 6.7e-107 391.3 303 65.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.5e-106 390.2 268 70.1
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.7e-106 388.3 315 61.9
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.3e-105 387.1 313 62.0
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.3e-105 387.1 281 63.3
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.2e-105 386.3 311 63.7
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.8e-105 386.0 304 68.1
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.4e-104 382.9 310 61.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.4e-104 382.9 280 65.7
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.1e-104 382.1 287 65.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.3e-104 381.7 309 62.5
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 9.0e-104 380.9 280 67.5
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.6e-103 379.4 315 61.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.4e-103 379.0 280 65.7
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 5.9e-103 378.3 280 66.1
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 7.6e-103 377.9 314 62.1
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 5.0e-102 375.2 311 60.5
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 4.6e-100 368.6 314 61.1
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.3e-99 366.3 324 57.7
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.5e-98 362.8 309 58.6
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.2e-97 359.8 280 65.7
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 5.3e-96 355.1 310 57.4
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.2e-95 354.0 324 54.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.5e-95 352.1 274 62.4
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 5.0e-94 348.6 332 56.0
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 6.5e-94 348.2 275 65.5
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.9e-93 346.7 312 58.3
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.9e-93 346.7 309 59.2
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.5e-93 346.3 313 58.5
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.2e-93 344.7 327 56.0
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.2e-92 344.0 315 57.8
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.6e-92 343.6 315 57.1
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 2.7e-92 342.8 315 57.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.7e-92 342.0 240 71.2
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.0e-91 340.9 314 57.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.8e-91 340.1 315 56.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.8e-91 340.1 279 60.9
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 5.1e-91 338.6 313 56.9
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 5.1e-91 338.6 308 57.1
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 6.7e-91 338.2 313 56.9
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.5e-90 337.0 313 56.5
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.6e-90 336.3 308 57.1
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.4e-90 335.5 312 56.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 5.7e-90 335.1 308 57.1
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 9.7e-90 334.3 315 55.9
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.7e-89 333.6 313 56.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.7e-89 332.4 308 56.2
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.7e-89 332.4 308 56.2
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 4.8e-89 332.0 315 56.2
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 6.3e-89 331.6 313 55.9
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-88 330.9 288 57.6
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 3.1e-88 329.3 240 67.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 9.1e-88 327.8 248 62.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.2e-86 323.2 233 70.8
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 5.5e-85 318.5 221 70.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.9e-83 312.4 246 64.6
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.0e-82 310.1 279 55.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.3e-81 307.4 267 58.4
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.7e-81 307.0 265 59.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 8.0e-76 288.1 279 51.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.0e-75 285.8 282 52.1
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.8e-73 279.6 276 50.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.1e-72 277.7 278 49.6
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.9e-61 240.4 202 58.9
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.3e-49 201.1 194 57.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 4.1e-48 196.1 280 41.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.0e-46 191.4 192 52.1
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.3e-45 186.0 169 57.4
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 6.4e-41 172.2 107 78.5
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 5.4e-40 169.1 137 62.8
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.7e-39 166.8 109 70.6
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.4e-35 154.5 112 67.0
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 9.6e-13 78.6 248 30.6
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.9e-09 67.0 66 54.5


User provided reference genes

Program Settings