Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 4.6e-39 164.1 83 100.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.2e-26 122.9 95 74.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.9e-25 118.2 95 72.6
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 5.5e-24 114.0 89 69.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.7e-23 110.9 98 70.4
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.8e-22 109.0 87 63.2
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 3.0e-22 108.2 89 64.0
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 5.3e-19 97.4 104 56.7
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.7e-18 95.1 104 55.8
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 1.2e-13 79.7 98 53.1
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.2e-13 79.7 94 52.1
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 4.4e-13 77.8 94 52.1
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-12 75.5 94 51.1
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.1e-11 71.2 104 43.3
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 5.4e-11 70.9 99 52.5
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 5.4e-11 70.9 85 51.8
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 5.4e-11 70.9 105 47.6
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 9.1e-11 70.1 98 45.9
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.2e-10 69.7 119 41.2
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-10 68.2 85 48.2
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 4.5e-10 67.8 119 41.2
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 4.5e-10 67.8 84 52.4
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 5.9e-10 67.4 74 52.7
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 5.9e-10 67.4 102 43.1
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.3e-09 66.2 95 42.1
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.7e-09 65.9 85 50.6
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.7e-09 65.9 85 44.7
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.2e-09 65.5 101 41.6
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 2.2e-09 65.5 96 44.8
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 3.8e-09 64.7 127 36.2
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.8e-09 64.7 85 43.5
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 5.0e-09 64.3 83 47.0
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 6.5e-09 63.9 73 52.1
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 6.5e-09 63.9 73 52.1
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 6.5e-09 63.9 74 48.6
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.5e-09 63.5 96 46.9
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 8.5e-09 63.5 96 49.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.1e-08 63.2 88 45.5
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.1e-08 63.2 109 37.6
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.9e-08 62.4 77 49.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.9e-08 62.4 87 47.1
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 1.9e-08 62.4 95 48.4
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 1.9e-08 62.4 81 48.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.5e-08 62.0 84 41.7
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 2.5e-08 62.0 39 76.9
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.5e-08 62.0 111 39.6
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.5e-08 62.0 95 46.3
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.5e-08 62.0 71 46.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 3.2e-08 61.6 96 42.7
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.2e-08 61.6 40 77.5
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.2e-08 61.6 74 48.6
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 3.2e-08 61.6 90 43.3
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 4.2e-08 61.2 83 41.0
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.2e-08 61.2 101 41.6
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.2e-08 61.2 101 41.6
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.2e-08 60.5 94 44.7
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 7.2e-08 60.5 123 35.0
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 7.2e-08 60.5 100 40.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 9.4e-08 60.1 40 75.0
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 1.2e-07 59.7 74 44.6
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.2e-07 59.7 123 34.1
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.6e-07 59.3 94 41.5
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 1.6e-07 59.3 76 48.7
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 2.1e-07 58.9 88 39.8
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.7e-07 58.5 97 38.1
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.7e-07 58.5 123 34.1
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 3.6e-07 58.2 42 69.0
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.6e-07 58.2 95 43.2
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 4.7e-07 57.8 87 42.5
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.7e-07 57.8 36 77.8
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.7e-07 57.8 38 73.7
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 4.7e-07 57.8 97 41.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 6.1e-07 57.4 106 34.9
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 6.1e-07 57.4 85 40.0
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 6.1e-07 57.4 31 90.3
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 6.1e-07 57.4 97 41.2
PGSC0003DMG400007842 Solanum tuberosum HOM05D001023 ORTHO05D000912 6.1e-07 57.4 77 42.9
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 6.1e-07 57.4 71 46.5
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 8.0e-07 57.0 125 37.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.0e-06 56.6 104 36.5
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.0e-06 56.6 88 39.8
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.0e-06 56.6 88 44.3
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.4e-06 56.2 34 79.4
Sopen12g006680 Solanum pennellii HOM05D004022 ORTHO05D004090 1.4e-06 56.2 77 41.6
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.8e-06 55.8 40 70.0
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.8e-06 55.8 40 70.0
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-06 55.8 112 35.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.3e-06 55.5 96 37.5
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.3e-06 55.5 31 83.9
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 3.0e-06 55.1 93 39.8
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.0e-06 55.1 112 35.7
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 3.0e-06 55.1 101 38.6
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.0e-06 54.7 96 37.5
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 4.0e-06 54.7 40 72.5
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 4.0e-06 54.7 39 66.7
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 6.8e-06 53.9 54 59.3
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 6.8e-06 53.9 40 65.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 8.8e-06 53.5 89 40.4
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 8.8e-06 53.5 37 67.6
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 8.8e-06 53.5 100 36.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 8.8e-06 53.5 95 37.9
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 8.8e-06 53.5 94 37.2
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 8.8e-06 53.5 91 38.5


User provided reference genes

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