Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 7.9e-299 1029.6 504 100.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 7.0e-263 910.2 474 92.8
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 5.5e-260 900.6 466 92.9
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.0e-254 882.1 482 89.0
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.1e-252 876.3 479 88.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 9.4e-252 873.2 482 87.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 9.8e-249 863.2 476 87.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 4.8e-248 860.9 482 86.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.4e-247 859.4 482 85.7
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.6e-233 812.0 482 82.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-225 786.2 482 78.4
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.9e-224 781.2 470 78.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.4e-223 779.6 480 78.1
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.0e-223 777.3 469 79.3
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-221 773.1 471 79.0
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-221 772.7 471 78.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.9e-221 771.5 471 77.1
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.6e-221 770.8 473 76.3
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-220 770.0 471 77.9
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 4.3e-220 768.1 469 78.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.3e-220 767.3 479 75.6
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.3e-220 767.3 486 74.7
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.2e-219 766.5 473 76.3
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.6e-219 766.1 473 76.3
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.1e-219 765.8 472 76.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.7e-219 764.6 472 76.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 6.2e-219 764.2 478 76.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.1e-219 763.8 473 76.7
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.4e-218 763.1 486 75.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.8e-218 762.7 485 75.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 6.8e-218 760.8 476 77.3
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.8e-218 760.8 471 77.1
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.2e-217 760.0 470 78.3
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.4e-216 754.2 485 74.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.1e-215 753.4 470 75.1
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.1e-215 750.7 470 77.7
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.2e-215 750.4 477 74.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.3e-213 746.5 482 73.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.7e-213 746.1 471 75.4
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-212 742.7 482 74.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.5e-212 742.3 482 74.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.3e-212 741.5 471 73.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 7.3e-212 740.7 470 75.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.6e-211 739.6 474 74.5
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.6e-211 739.6 476 72.5
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 6.2e-211 737.6 482 74.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.3e-210 735.7 469 73.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.4e-209 731.5 476 71.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 9.9e-209 730.3 366 95.9
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.7e-208 729.6 452 77.2
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 4.1e-207 724.9 474 73.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.2e-206 723.4 414 84.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.1e-206 722.6 481 71.9
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.7e-206 722.2 452 75.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 7.8e-206 720.7 427 80.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 6.6e-205 717.6 479 72.2
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-204 716.5 468 72.6
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.9e-204 716.1 479 72.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.9e-204 716.1 440 76.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.5e-204 715.7 479 72.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.3e-204 715.3 468 73.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 9.6e-204 713.8 446 74.9
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.2e-203 713.4 468 72.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.6e-203 711.8 475 72.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.1e-202 710.3 565 62.3
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 8.9e-202 707.2 477 71.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.9e-200 701.4 478 72.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.4e-200 700.7 474 72.2
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.2e-198 696.8 474 71.5
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.9e-197 691.8 473 71.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 8.7e-197 690.6 441 75.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.5e-196 689.9 483 71.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 9.6e-196 687.2 471 70.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.3e-195 686.8 475 71.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.1e-195 686.0 477 68.6
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.2e-195 684.5 473 69.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-194 683.7 467 71.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 9.0e-194 680.6 425 75.5
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.5e-193 678.3 412 77.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 5.8e-193 677.9 483 70.6
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 7.6e-193 677.6 494 66.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 8.4e-192 674.1 470 70.9
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-191 673.7 483 69.6
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.1e-191 673.7 470 70.9
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.2e-191 672.2 471 70.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.2e-191 671.8 486 69.3
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 7.9e-190 667.5 470 70.6
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 7.9e-190 667.5 471 70.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.0e-189 667.2 471 70.5
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.3e-189 666.8 471 70.5
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.3e-189 666.8 471 70.3
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.0e-189 665.6 471 70.1
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 5.1e-189 664.8 471 70.3
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 8.7e-189 664.1 471 69.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 8.7e-189 664.1 471 69.9
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-188 663.7 473 69.1
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.3e-188 662.1 471 68.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.1e-186 657.1 471 67.5
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-186 656.4 471 69.6
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.2e-185 653.7 512 62.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-184 650.2 471 69.2
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 4.9e-184 648.3 466 68.0
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 6.4e-184 647.9 482 67.0
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.9e-183 646.4 472 67.6
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-179 633.3 525 62.5
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.2e-177 627.1 442 70.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.3e-173 612.8 474 63.3
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 4.8e-171 605.1 471 65.6
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.5e-164 582.8 482 63.3
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.4e-164 581.3 346 78.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-162 577.0 407 68.6
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.9e-160 569.3 510 56.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-157 558.5 361 74.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.3e-155 551.6 490 59.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.4e-154 550.4 493 57.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.9e-152 542.7 481 58.2
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.5e-144 514.6 480 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.5e-135 486.5 470 52.3
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.7e-131 472.6 549 46.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.4e-124 449.1 469 52.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.6e-121 440.7 269 76.2
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.2e-113 414.5 306 65.7
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.3e-112 410.2 327 66.4
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.1e-106 391.3 236 79.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.2e-94 351.3 486 43.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.9e-91 339.3 282 65.6
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.8e-86 323.6 381 45.1
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.0e-84 317.4 199 75.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.1e-82 311.6 273 59.7
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-76 291.2 483 36.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.9e-72 276.6 248 59.7
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.3e-71 273.1 269 51.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.4e-69 268.1 505 36.2
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.7e-64 249.2 461 37.3
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 9.6e-63 245.4 458 36.7
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.4e-55 219.2 170 65.9
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.7e-54 216.9 181 60.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 8.2e-54 215.7 118 92.4
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.9e-53 212.6 340 40.3
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.9e-51 207.2 207 53.6
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-49 201.4 111 80.2
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.6e-49 201.4 198 54.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-48 198.0 111 78.4
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.9e-48 196.8 111 79.3
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.9e-43 180.6 202 51.5
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.3e-40 171.0 105 77.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.3e-39 167.2 111 68.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.3e-39 167.2 122 67.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.9e-36 156.4 317 32.8
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.8e-32 144.8 122 61.5
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.9e-32 143.7 92 70.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 5.2e-32 143.3 116 58.6
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.2e-30 137.9 78 83.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.0e-27 129.0 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-20 105.1 125 51.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 4.2e-18 97.1 58 79.3
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.5e-12 77.4 62 59.7
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 7.2e-10 69.7 45 75.6
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 3.6e-09 67.4 38 78.9
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.0e-08 65.9 47 68.1
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.2e-07 62.4 46 63.0
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.2e-06 58.2 41 70.7
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 6.3e-06 56.6 36 75.0


User provided reference genes

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