Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g067110 Medicago truncatula HOM05D000596 ORTHO05D015699 9.8e-29 129.4 64 100.0
Medtr0534s0030 Medicago truncatula HOM05D000596 ORTHO05D015699 1.2e-26 122.5 62 96.8
Medtr1g050430 Medicago truncatula HOM05D000596 ORTHO05D015699 7.7e-26 119.8 63 93.7
Medtr5g030050 Medicago truncatula HOM05D000596 ORTHO05D002115 5.6e-24 113.6 61 90.2
Medtr8g445330 Medicago truncatula HOM05D000596 ORTHO05D015699 5.6e-24 113.6 63 90.5
Medtr7g094970 Medicago truncatula HOM05D000596 ORTHO05D002115 6.1e-23 110.2 61 88.5
Psat0s4437g0080 Pisum sativum HOM05D000596 ORTHO05D002115 1.8e-19 98.6 63 77.8
TPR.G9922 Trifolium pratense HOM05D000596 ORTHO05D002115 2.0e-18 95.1 62 74.2
VMungo1383G1529 Vigna mungo HOM05D000596 ORTHO05D002115 1.7e-17 92.0 63 71.4
Phvul.001G151900 Phaseolus vulgaris HOM05D000596 ORTHO05D002115 2.5e-16 88.2 63 68.3
Glyma.03G154400 Glycine max HOM05D000596 ORTHO05D002115 1.6e-15 85.5 63 66.7
Lalb_Chr20g0107791 Lupinus albus HOM05D000596 ORTHO05D002115 1.2e-13 79.3 61 63.9
Medtr0599s0010 Medicago truncatula HOM05D000596 ORTHO05D015699 2.0e-13 78.6 44 88.6
Medtr3g034810 Medicago truncatula HOM05D000596 ORTHO05D015699 2.0e-13 78.6 44 88.6
arahy.Tifrunner.gnm1.ann1.KA44CE Arachis hypogaea HOM05D000596 ORTHO05D002115 5.8e-13 77.0 56 66.1
arahy.Tifrunner.gnm1.ann1.C5WNZ8 Arachis hypogaea HOM05D000596 ORTHO05D002115 1.3e-12 75.9 56 66.1
Lj1g0023177 Lotus japonicus HOM05D000596 ORTHO05D002115 6.4e-12 73.6 61 60.7
Haze_04697 Corylus avellana HOM05D000596 ORTHO05D002115 3.2e-11 71.2 62 58.1
Medtr7g011663 Medicago truncatula HOM05D000596 ORTHO05D002115 3.2e-11 71.2 61 55.7
TAR636G1765 Trochodendron aralioides HOM05D000596 ORTHO05D002115 4.1e-11 70.9 58 58.6
FvH4_2g23440 Fragaria vesca HOM05D000596 ORTHO05D002115 7.0e-11 70.1 63 58.7
FAN24G1867 Fragaria x ananassa HOM05D000596 ORTHO05D002115 7.0e-11 70.1 63 58.7
Haze_04698 Corylus avellana HOM05D000596 ORTHO05D002115 9.2e-11 69.7 62 56.5
Medtr0042s0040 Medicago truncatula HOM05D000596 ORTHO05D015699 9.2e-11 69.7 34 100.0
Glyma.03G154700 Glycine max HOM05D000596 ORTHO05D002115 1.2e-10 69.3 61 54.1
CiPaw.08G105500 Carya illinoinensis HOM05D000596 ORTHO05D002115 1.6e-10 68.9 60 55.0
Lj1g0018989 Lotus japonicus HOM05D000596 ORTHO05D002115 1.6e-10 68.9 61 55.7
CiPaw.07G091000 Carya illinoinensis HOM05D000596 ORTHO05D002115 2.0e-10 68.6 50 62.0
Medtr7g011770 Medicago truncatula HOM05D000596 ORTHO05D002115 2.0e-10 68.6 61 55.7
Glyma.19G157000 Glycine max HOM05D000596 ORTHO05D002115 2.7e-10 68.2 61 54.1
Psat3g199080 Pisum sativum HOM05D000596 ORTHO05D002115 4.6e-10 67.4 61 54.1
TPR.G660 Trifolium pratense HOM05D000596 ORTHO05D015699 6.0e-10 67.0 56 58.9
FAN15G2104 Fragaria x ananassa HOM05D000596 ORTHO05D002115 7.8e-10 66.6 63 55.6
VMungo1383G0895 Vigna mungo HOM05D000596 ORTHO05D002115 1.0e-09 66.2 61 54.1
FAN27G1990 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.3e-09 65.9 63 55.6
CANSAT25G3448 Cannabis sativa HOM05D000596 ORTHO05D002115 1.7e-09 65.5 64 53.1
FAN20G2085 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.7e-09 65.5 63 54.0
MD11G1208700 Malus domestica HOM05D000596 ORTHO05D002115 1.7e-09 65.5 53 62.3
RcHm_v2.0_Chr6g0290871 Rosa chinensis HOM05D000596 ORTHO05D002115 1.7e-09 65.5 65 53.8
TPR.G126 Trifolium pratense HOM05D000596 ORTHO05D002115 2.3e-09 65.1 56 57.1
arahy.Tifrunner.gnm1.ann1.YAY0HW Arachis hypogaea HOM05D000596 ORTHO05D002115 3.0e-09 64.7 58 55.2
Ciclev10023706m.g Citrus clementina HOM05D000596 ORTHO05D002115 3.0e-09 64.7 64 48.4
Dinv32926 Davidia involucrata HOM05D000596 ORTHO05D002115 3.0e-09 64.7 65 52.3
Manes.01G207300 Manihot esculenta HOM05D000596 ORTHO05D002115 3.0e-09 64.7 54 61.1
arahy.Tifrunner.gnm1.ann1.PN0N9Z Arachis hypogaea HOM05D000596 ORTHO05D002115 3.9e-09 64.3 58 55.2
RcHm_v2.0_Chr6g0290941 Rosa chinensis HOM05D000596 ORTHO05D002115 3.9e-09 64.3 54 61.1
SHI25379 Sapria himalayana HOM05D000596 ORTHO05D015699 3.9e-09 64.3 62 50.0
Prupe.8G239900 Prunus persica HOM05D000596 ORTHO05D002115 5.0e-09 63.9 53 60.4
MD11G1284300 Malus domestica HOM05D000596 ORTHO05D002115 6.6e-09 63.5 53 58.5
vmacro14647 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 6.6e-09 63.5 66 48.5
Cc01_g19400 Coffea canephora HOM05D000596 ORTHO05D002115 8.6e-09 63.2 51 58.8
Phvul.001G152100 Phaseolus vulgaris HOM05D000596 ORTHO05D002115 8.6e-09 63.2 61 49.2
QL12p021436 Quercus lobata HOM05D000596 ORTHO05D002115 8.6e-09 63.2 56 50.0
Manes.05G077200 Manihot esculenta HOM05D000596 ORTHO05D002115 1.1e-08 62.8 55 58.2
ClCG07G000310 Citrullus lanatus HOM05D000596 ORTHO05D002115 1.5e-08 62.4 64 50.0
CsaV3_6G037230 Cucumis sativus L. HOM05D000596 ORTHO05D002115 1.5e-08 62.4 53 58.5
FAN15G1090 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.5e-08 62.4 63 54.0
FAN24G2252 Fragaria x ananassa HOM05D000596 ORTHO05D002115 1.5e-08 62.4 65 52.3
vmacro16912 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 1.5e-08 62.4 57 52.6
Migut.N02048 Erythranthe guttata HOM05D000596 ORTHO05D002115 1.9e-08 62.0 65 44.6
Lalb_Chr20g0107801 Lupinus albus HOM05D000596 ORTHO05D002115 1.9e-08 62.0 53 60.4
MD03G1263500 Malus domestica HOM05D000596 ORTHO05D002115 1.9e-08 62.0 52 59.6
Sabra02G0042200 Salix brachista HOM05D000596 ORTHO05D002115 2.5e-08 61.6 57 54.4
MELO3C014392.2 Cucumis melo HOM05D000596 ORTHO05D002115 3.3e-08 61.2 64 48.4
Dinv34762 Davidia involucrata HOM05D000596 ORTHO05D002115 3.3e-08 61.2 55 61.8
Migut.N02050 Erythranthe guttata HOM05D000596 ORTHO05D002115 3.3e-08 61.2 65 44.6
Potri.002G052100 Populus trichocarpa HOM05D000596 ORTHO05D002115 3.3e-08 61.2 61 49.2
Sabra05G0160400 Salix brachista HOM05D000596 ORTHO05D002115 3.3e-08 61.2 61 52.5
TAR365G1007 Trochodendron aralioides HOM05D000596 ORTHO05D002115 3.3e-08 61.2 58 53.4
Duzib133G0476 Durio zibethinus HOM05D000596 ORTHO05D002115 4.3e-08 60.8 60 51.7
Rhsim13G0025800 Rhododendron simsii HOM05D000596 ORTHO05D002115 4.3e-08 60.8 55 54.5
GSVIVG01001153001 Vitis vinifera HOM05D000596 ORTHO05D002115 4.3e-08 60.8 63 49.2
CSS0018744 Camellia sinensis var. sinensis HOM05D000596 ORTHO05D002115 5.6e-08 60.5 64 50.0
COL.COLO4_09082 Corchorus olitorius HOM05D000596 ORTHO05D002115 5.6e-08 60.5 61 52.5
Duzib211G0501 Durio zibethinus HOM05D000596 ORTHO05D002115 5.6e-08 60.5 60 53.3
FAN15G2683 Fragaria x ananassa HOM05D000596 ORTHO05D002115 5.6e-08 60.5 65 50.8
Potri.005G210300 Populus trichocarpa HOM05D000596 ORTHO05D002115 5.6e-08 60.5 57 54.4
FAN24G1705 Fragaria x ananassa HOM05D000596 ORTHO05D002115 7.3e-08 60.1 54 61.1
TAR362G0849 Trochodendron aralioides HOM05D000596 ORTHO05D002115 7.3e-08 60.1 56 57.1
FvH4_2g23400 Fragaria vesca HOM05D000596 ORTHO05D002115 9.5e-08 59.7 54 61.1
TWI38G0375 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 9.5e-08 59.7 56 57.1
TWI38G1945 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 9.5e-08 59.7 56 57.1
vmacro02578 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 9.5e-08 59.7 55 54.5
GSVIVG01001155001 Vitis vinifera HOM05D000596 ORTHO05D002115 9.5e-08 59.7 62 51.6
MSTRG.12561 Avicennia marina HOM05D000596 ORTHO05D002115 1.2e-07 59.3 51 56.9
Migut.D00306 Erythranthe guttata HOM05D000596 ORTHO05D002115 1.2e-07 59.3 66 45.5
FvH4_2g23420 Fragaria vesca HOM05D000596 ORTHO05D002115 1.2e-07 59.3 65 50.8
vmacro14917 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 1.2e-07 59.3 55 56.4
Migut.N02049 Erythranthe guttata HOM05D000596 ORTHO05D002115 1.6e-07 58.9 65 43.1
Lsat_1_v5_gn_9_3541 Lactuca sativa HOM05D000596 ORTHO05D002115 1.6e-07 58.9 60 50.0
PGR119G1085 Punica granatum HOM05D000596 ORTHO05D002115 1.6e-07 58.9 65 49.2
Duzib138G1316 Durio zibethinus HOM05D000596 ORTHO05D002115 2.1e-07 58.5 60 50.0
Oeu018181.1 Olea europaea HOM05D000596 ORTHO05D002115 2.1e-07 58.5 56 50.0
Actinidia21117 Actinidia chinensis HOM05D000596 ORTHO05D002115 2.8e-07 58.2 69 50.7
EL10Ac7g16724 Beta vulgaris HOM05D000596 ORTHO05D002115 2.8e-07 58.2 64 46.9
AUR62044071 Chenopodium quinoa HOM05D000596 ORTHO05D002115 2.8e-07 58.2 55 50.9
Ciclev10018875m.g Citrus clementina HOM05D000596 ORTHO05D002115 2.8e-07 58.2 64 48.4
FvH4_2g22720 Fragaria vesca HOM05D000596 ORTHO05D002115 2.8e-07 58.2 65 47.7
Hma1.2p1_1739F.1_g300010 Hydrangea macrophylla HOM05D000596 ORTHO05D002115 2.8e-07 58.2 65 46.2
Thecc.01G277500 Theobroma cacao HOM05D000596 ORTHO05D002115 2.8e-07 58.2 60 50.0
FAN27G0621 Fragaria x ananassa HOM05D000596 ORTHO05D025538 3.6e-07 57.8 54 55.6
TWI59G1004 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 3.6e-07 57.8 54 55.6
HanXRQChr03g0061811 Helianthus annuus HOM05D000596 ORTHO05D002115 4.7e-07 57.4 55 52.7
vmacro02579 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 4.7e-07 57.4 57 49.1
ECA248G3892 Erigeron canadensis HOM05D000596 ORTHO05D002115 8.1e-07 56.6 54 59.3
HanXRQChr10g0282621 Helianthus annuus HOM05D000596 ORTHO05D002115 8.1e-07 56.6 55 52.7
Hund20413 Selenicereus undatus HOM05D000596 ORTHO05D002115 8.1e-07 56.6 57 52.6
AT4G02780 Arabidopsis thaliana HOM05D000596 ORTHO05D002115 1.1e-06 56.2 63 44.4
arahy.Tifrunner.gnm1.ann1.HNK79X Arachis hypogaea HOM05D000596 ORTHO05D002115 1.1e-06 56.2 62 45.2
Sed0019179 Sechium edule HOM05D000596 ORTHO05D002115 1.1e-06 56.2 64 46.9
vmacro02580 Vaccinium macrocarpon HOM05D000596 ORTHO05D002115 1.1e-06 56.2 57 49.1
AL6G50150 Arabidopsis lyrata HOM05D000596 ORTHO05D002115 1.4e-06 55.8 62 43.5
ECA234G4817 Erigeron canadensis HOM05D000596 ORTHO05D002115 1.4e-06 55.8 55 54.5
Gohir.A08G066500 Gossypium hirsutum HOM05D000596 ORTHO05D002115 1.4e-06 55.8 58 51.7
Gohir.D08G075200 Gossypium hirsutum HOM05D000596 ORTHO05D002115 1.4e-06 55.8 58 51.7
Gorai.004G079500 Gossypium raimondii HOM05D000596 ORTHO05D002115 1.4e-06 55.8 58 51.7
Nn4g26282 Nelumbo nucifera HOM05D000596 ORTHO05D002115 1.4e-06 55.8 60 51.7
Aqoxy7G01108 Aquilegia oxysepala HOM05D000596 ORTHO05D002115 1.8e-06 55.5 50 50.0
CARHR251150 Cardamine hirsuta HOM05D000596 ORTHO05D002115 1.8e-06 55.5 56 46.4
Cfa006150 Carpinus fangiana HOM05D000596 ORTHO05D002115 1.8e-06 55.5 40 65.0
FvH4_3g14111 Fragaria vesca HOM05D000596 ORTHO05D002115 1.8e-06 55.5 51 52.9
Gohir.D11G128500 Gossypium hirsutum HOM05D000596 ORTHO05D002115 1.8e-06 55.5 60 46.7
Gorai.007G137400 Gossypium raimondii HOM05D000596 ORTHO05D002115 1.8e-06 55.5 60 46.7
Aa31LG5G2460 Aethionema arabicum HOM05D000596 ORTHO05D002115 2.3e-06 55.1 60 45.0
A09p02200 Brassica napus HOM05D000596 ORTHO05D002115 2.3e-06 55.1 63 44.4
BraA09t35869Z Brassica rapa HOM05D000596 ORTHO05D002115 2.3e-06 55.1 63 44.4
Cc08_g07530 Coffea canephora HOM05D000596 ORTHO05D002115 2.3e-06 55.1 61 44.3
TWI59G1243 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 2.3e-06 55.1 61 45.9
BcaC04g24014 Brassica carinata HOM05D000596 ORTHO05D002115 3.1e-06 54.7 63 44.4
C09p02280 Brassica napus HOM05D000596 ORTHO05D002115 3.1e-06 54.7 63 44.4
BolC9t53157H Brassica oleracea HOM05D000596 ORTHO05D002115 3.1e-06 54.7 63 44.4
Thhalv10029352m.g Eutrema salsugineum HOM05D000596 ORTHO05D002115 3.1e-06 54.7 63 44.4
TWI13G0001 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 3.1e-06 54.7 58 48.3
TWI74G0138 Tripterygium wilfordii HOM05D000596 ORTHO05D002115 3.1e-06 54.7 58 48.3
Actinidia24898 Actinidia chinensis HOM05D000596 ORTHO05D002115 4.0e-06 54.3 66 45.5
Oeu001634.1 Olea europaea HOM05D000596 ORTHO05D002115 4.0e-06 54.3 61 50.8
Aqoxy7G01313 Aquilegia oxysepala HOM05D000596 ORTHO05D002115 5.2e-06 53.9 50 48.0
BcaB01g02005 Brassica carinata HOM05D000596 ORTHO05D002115 5.2e-06 53.9 63 42.9
Carub.0006s3428 Capsella rubella HOM05D000596 ORTHO05D002115 5.2e-06 53.9 63 44.4
Cpa.g.sc52.43 Carica papaya HOM05D000596 ORTHO05D002115 5.2e-06 53.9 55 50.9
AUR62040183 Chenopodium quinoa HOM05D000596 ORTHO05D002115 5.2e-06 53.9 55 47.3
Atru.chr5.1453 Acer truncatum HOM05D000596 ORTHO05D002115 6.8e-06 53.5 60 46.7
DCAR_019490 Daucus carota HOM05D000596 ORTHO05D002115 8.9e-06 53.1 55 49.1
HanXRQChr15g0466721 Helianthus annuus HOM05D000596 ORTHO05D002115 8.9e-06 53.1 57 49.1
Sc24g0002780 Simmondsia chinensis HOM05D000596 ORTHO05D002115 8.9e-06 53.1 55 49.1


User provided reference genes

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