Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g066880 Medicago truncatula HOM05D001703 ORTHO05D258588 2.4e-84 315.5 159 100.0
Medtr2g067200 Medicago truncatula HOM05D001703 ORTHO05D012658 4.0e-55 218.4 157 73.9
Medtr2g029120 Medicago truncatula HOM05D001703 ORTHO05D012658 4.7e-24 115.2 85 72.9
Glyma.11G163201 Glycine max HOM05D001703 ORTHO05D005708 8.9e-23 110.9 123 54.5
Phvul.008G157300 Phaseolus vulgaris HOM05D001703 ORTHO05D005708 8.9e-23 110.9 123 54.5
VMungo1383G1201 Vigna mungo HOM05D001703 ORTHO05D005708 8.9e-23 110.9 123 54.5
Glyma.01G075400 Glycine max HOM05D001703 ORTHO05D005708 1.2e-22 110.5 123 54.5
Ca_07392_v3 Cicer arietinum L. HOM05D001703 ORTHO05D005708 1.5e-22 110.2 123 53.7
Hma1.2p1_1040F.1_g250930 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 1.5e-22 110.2 123 54.5
Hma1.2p1_1098F.1_g256720 Hydrangea macrophylla HOM05D001703 ORTHO05D005708 1.5e-22 110.2 123 54.5
Lj1g0021366 Lotus japonicus HOM05D001703 ORTHO05D005708 1.5e-22 110.2 123 53.7
CiPaw.13G030200 Carya illinoinensis HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 53.7
Dinv44101 Davidia involucrata HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 53.7
Lalb_Chr01g0021531 Lupinus albus HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 54.5
MD07G1111000 Malus domestica HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 53.7
Potri.003G109900 Populus trichocarpa HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 52.8
Prupe.2G134500 Prunus persica HOM05D001703 ORTHO05D005708 2.0e-22 109.8 123 53.7
Actinidia33491 Actinidia chinensis HOM05D001703 ORTHO05D005708 2.6e-22 109.4 123 53.7
Lalb_Chr03g0039991 Lupinus albus HOM05D001703 ORTHO05D005708 2.6e-22 109.4 123 53.7
ATR0564G237 Amborella trichopoda HOM05D001703 ORTHO05D005708 3.4e-22 109.0 123 53.7
arahy.Tifrunner.gnm1.ann1.FL2079 Arachis hypogaea HOM05D001703 ORTHO05D005708 3.4e-22 109.0 123 53.7
ECA236G3770 Erigeron canadensis HOM05D001703 ORTHO05D005708 3.4e-22 109.0 126 52.4
HanXRQChr04g0123481 Helianthus annuus HOM05D001703 ORTHO05D005708 3.4e-22 109.0 126 51.6
Atru.chr5.204 Acer truncatum HOM05D001703 ORTHO05D005708 4.4e-22 108.6 123 52.8
Actinidia12665 Actinidia chinensis HOM05D001703 ORTHO05D005708 4.4e-22 108.6 123 52.8
Cpa.g.sc218.3 Carica papaya HOM05D001703 ORTHO05D005708 4.4e-22 108.6 118 55.1
COL.COLO4_12454 Corchorus olitorius HOM05D001703 ORTHO05D005708 4.4e-22 108.6 123 52.8
Haze_02737 Corylus avellana HOM05D001703 ORTHO05D005708 4.4e-22 108.6 123 52.8
PGR004G2547 Punica granatum HOM05D001703 ORTHO05D005708 4.4e-22 108.6 123 53.7
CAN.G899.24 Capsicum annuum HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
ClCG06G002530 Citrullus lanatus HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
Duzib138G1530 Durio zibethinus HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.0
FvH4_7g10500 Fragaria vesca HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
FAN06G1838 Fragaria x ananassa HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
FAN06G3291 Fragaria x ananassa HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
FAN10G2068 Fragaria x ananassa HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
FAN10G3449 Fragaria x ananassa HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 5.8e-22 108.2 126 50.8
MBI07_g35164_MAGBIO Magnolia biondii HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 53.7
RcHm_v2.0_Chr1g0348291 Rosa chinensis HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
Sopen01g036420 Solanum pennellii HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
PGSC0003DMG400026030 Solanum tuberosum HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.8
Thecc.01G387100 Theobroma cacao HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 52.0
GSVIVG01018186001 Vitis vinifera HOM05D001703 ORTHO05D005708 5.8e-22 108.2 123 53.7
Ciclev10018974m.g Citrus clementina HOM05D001703 ORTHO05D005708 7.6e-22 107.8 123 53.7
Gohir.A11G077500 Gossypium hirsutum HOM05D001703 ORTHO05D005708 7.6e-22 107.8 123 52.0
Potri.001G123600 Populus trichocarpa HOM05D001703 ORTHO05D005708 7.6e-22 107.8 140 49.3
vmacro13467 Vaccinium macrocarpon HOM05D001703 ORTHO05D005708 7.6e-22 107.8 123 53.7
Medtr7g044770 Medicago truncatula HOM05D001703 ORTHO05D005708 9.9e-22 107.5 124 53.2
Nn6g33913 Nelumbo nucifera HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.0
PSO063G3743 Papaver somniferum HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.0
PSO782G2754 Papaver somniferum HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.0
Sp4g27090 Schrenkiella parvula HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.8
Sed0002552 Sechium edule HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.0
TWI14G0062 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 9.9e-22 107.5 123 52.8
Duzib133G0844 Durio zibethinus HOM05D001703 ORTHO05D005708 1.3e-21 107.1 123 51.2
Sc12g0008260 Simmondsia chinensis HOM05D001703 ORTHO05D005708 1.3e-21 107.1 123 52.8
TWI59G0672 Tripterygium wilfordii HOM05D001703 ORTHO05D005708 1.3e-21 107.1 123 52.0
TAR375G0518 Trochodendron aralioides HOM05D001703 ORTHO05D005708 1.3e-21 107.1 123 52.8
AL4G44120 Arabidopsis lyrata HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
AT1G45332 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
AT2G45030 Arabidopsis thaliana HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
CSS0006474 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
CSS0031871 Camellia sinensis var. sinensis HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
CARHR140280 Cardamine hirsuta HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
Os03g0565500 Oryza sativa ssp. japonica HOM05D001703 ORTHO05D005708 1.7e-21 106.7 123 52.0
Aa31LG1G26610 Aethionema arabicum HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 52.0
Carub.0004s2762 Capsella rubella HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 52.0
Cfa011126 Carpinus fangiana HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 51.2
MELO3C022276.2 Cucumis melo HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 52.0
Gohir.D07G154000 Gossypium hirsutum HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 51.2
Gorai.001G176200 Gossypium raimondii HOM05D001703 ORTHO05D005708 2.2e-21 106.3 123 51.2
SalBow5G4945 Salvia bowleyana HOM05D001703 ORTHO05D005708 2.2e-21 106.3 140 48.6
DCAR_031877 Daucus carota HOM05D001703 ORTHO05D005708 2.9e-21 105.9 130 50.0
Thhalv10001325m.g Eutrema salsugineum HOM05D001703 ORTHO05D005708 2.9e-21 105.9 123 52.0
Gohir.D11G081900 Gossypium hirsutum HOM05D001703 ORTHO05D005708 2.9e-21 105.9 123 51.2
Gorai.007G087600 Gossypium raimondii HOM05D001703 ORTHO05D005708 2.9e-21 105.9 123 51.2
THA.LOC104827585 Tarenaya hassleriana HOM05D001703 ORTHO05D005708 2.9e-21 105.9 123 52.0
Zm00001eb064310 Zea mays HOM05D001703 ORTHO05D005708 2.9e-21 105.9 123 52.0
Ah.05g167390 Amaranthus hybridus HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 52.8
BcaC02g12268 Brassica carinata HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 54.5
A05p05120 Brassica napus HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 54.5
C04p05970 Brassica napus HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 54.5
BolC4t22228H Brassica oleracea HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 54.5
BraA05t19486Z Brassica rapa HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 54.5
AUR62034061 Chenopodium quinoa HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 52.8
unitig_0.g1321 Utricularia gibba HOM05D001703 ORTHO05D005708 3.8e-21 105.5 123 50.4
Aqoxy5G03848 Aquilegia oxysepala HOM05D001703 ORTHO05D005708 4.9e-21 105.1 123 51.2
Migut.B01569 Erythranthe guttata HOM05D001703 ORTHO05D005708 4.9e-21 105.1 123 52.0
Eucgr.D02509 Eucalyptus grandis HOM05D001703 ORTHO05D005708 4.9e-21 105.1 123 52.0
Oeu063215.2 Olea europaea HOM05D001703 ORTHO05D005708 4.9e-21 105.1 123 52.0
Peaxi162Scf00377g00725 Petunia axillaris HOM05D001703 ORTHO05D005708 4.9e-21 105.1 127 51.2
EL10Ac8g19417 Beta vulgaris HOM05D001703 ORTHO05D005708 6.4e-21 104.8 123 52.0
Gohir.A07G147800 Gossypium hirsutum HOM05D001703 ORTHO05D005708 6.4e-21 104.8 123 50.4
Medtr2g020660 Medicago truncatula HOM05D001703 ORTHO05D005708 6.4e-21 104.8 124 50.8
TPR.G39063 Trifolium pratense HOM05D001703 ORTHO05D005708 6.4e-21 104.8 125 50.4
Cc02_g24480 Coffea canephora HOM05D001703 ORTHO05D005708 8.4e-21 104.4 123 49.6
CsaV3_6G008600 Cucumis sativus L. HOM05D001703 ORTHO05D005708 8.4e-21 104.4 123 50.4
CDE08G1227 Ceratophyllum demersum HOM05D001703 ORTHO05D005708 1.1e-20 104.0 123 52.0
Psat3g157880 Pisum sativum HOM05D001703 ORTHO05D005708 1.1e-20 104.0 126 49.2
Medtr2g029210 Medicago truncatula HOM05D001703 ORTHO05D265197 1.9e-20 103.2 88 63.6
Rhsim02G0217200 Rhododendron simsii HOM05D001703 ORTHO05D005708 1.9e-20 103.2 123 52.0
Oeu061508.1 Olea europaea HOM05D001703 ORTHO05D005708 2.4e-20 102.8 123 49.6
HPP92_020903 Vanilla planifolia HOM05D001703 ORTHO05D005708 7.1e-20 101.3 123 48.8
Nitab4.5_0001823g0080 Nicotiana tabacum HOM05D001703 ORTHO05D005708 2.1e-19 99.8 135 48.9
Nitab4.5_0003110g0050 Nicotiana tabacum HOM05D001703 ORTHO05D005708 2.1e-19 99.8 135 48.9
Psat3g052960 Pisum sativum HOM05D001703 ORTHO05D005708 3.5e-19 99.0 122 50.0
Hund12552 Selenicereus undatus HOM05D001703 ORTHO05D005708 3.5e-19 99.0 139 47.5
SEGI_18917 Sequoiadendron giganteum HOM05D001703 ORTHO05D005708 1.0e-18 97.4 123 48.0
TPR.G18025 Trifolium pratense HOM05D001703 ORTHO05D005708 3.9e-18 95.5 124 47.6
Lj9C561G12 Lonicera japonica HOM05D001703 ORTHO05D005708 5.1e-18 95.1 147 46.3
Sabra01G0095200 Salix brachista HOM05D001703 ORTHO05D005708 5.1e-18 95.1 142 47.2
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 6.6e-18 94.7 122 48.4
FAN01G2709 Fragaria x ananassa HOM05D001703 ORTHO05D005708 1.1e-17 94.0 150 43.3
Medtr3g014380 Medicago truncatula HOM05D001703 ORTHO05D020871 1.5e-17 93.6 100 49.0
Medtr8g104250 Medicago truncatula HOM05D001703 ORTHO05D020871 1.5e-17 93.6 85 55.3
Pp3c22_17180 Physcomitrium patens HOM05D001703 ORTHO05D005708 1.9e-17 93.2 123 47.2
Pp3c19_15980 Physcomitrium patens HOM05D001703 ORTHO05D005708 7.3e-17 91.3 123 46.3
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 9.6e-17 90.9 123 45.5
Medtr2g028400 Medicago truncatula HOM05D001703 ORTHO05D012658 1.6e-16 90.1 139 44.6
QL06p030935 Quercus lobata HOM05D001703 ORTHO05D005708 1.6e-16 90.1 119 49.6
AagrBONN_evm.TU.Sc2ySwM_340.168 Anthoceros agrestis HOM05D001703 ORTHO05D005708 3.6e-16 89.0 123 44.7
Medtr2g028350 Medicago truncatula HOM05D001703 ORTHO05D012658 6.2e-16 88.2 144 41.0
Solyc01g090690.4 Solanum lycopersicum HOM05D001703 ORTHO05D005708 8.1e-16 87.8 77 58.4
SMO361G0314 Selaginella moellendorffii HOM05D001703 ORTHO05D005708 1.4e-15 87.0 123 45.5
Medtr2g028360 Medicago truncatula HOM05D001703 ORTHO05D259708 4.0e-15 85.5 147 39.5
PRCOL_00004175 Prasinoderma coloniale HOM05D001703 ORTHO05D005708 6.9e-15 84.7 129 40.3
QL11p052913 Quercus lobata HOM05D001703 ORTHO05D005708 6.9e-15 84.7 102 52.0
Medtr2g028330 Medicago truncatula HOM05D001703 ORTHO05D025847 9.0e-15 84.3 124 42.7
Medtr2g028440 Medicago truncatula HOM05D001703 ORTHO05D012658 9.0e-15 84.3 161 41.0
Medtr6g023380 Medicago truncatula HOM05D001703 ORTHO05D020871 3.4e-14 82.4 106 50.0
TPR.G10489 Trifolium pratense HOM05D001703 ORTHO05D025847 3.4e-14 82.4 161 39.8
Cfa026916 Carpinus fangiana HOM05D001703 ORTHO05D005708 4.4e-14 82.0 121 40.5
Medtr8g105070 Medicago truncatula HOM05D001703 ORTHO05D005708 4.4e-14 82.0 78 56.4
Medtr2g028380 Medicago truncatula HOM05D001703 ORTHO05D012658 2.2e-13 79.7 144 39.6
Medtr8g105060 Medicago truncatula HOM05D001703 ORTHO05D020871 2.2e-13 79.7 78 52.6
MCO11G478 Micromonas commoda HOM05D001703 ORTHO05D005708 3.8e-13 79.0 123 40.7
Medtr8g105040 Medicago truncatula HOM05D001703 ORTHO05D020871 2.1e-11 73.2 95 45.3
arahy.Tifrunner.gnm1.ann1.57CUP1 Arachis hypogaea HOM05D001703 ORTHO05D005708 3.0e-10 69.3 143 35.7
Medtr2g029125 Medicago truncatula HOM05D001703 ORTHO05D012658 3.0e-10 69.3 103 41.7
TPR.G26360 Trifolium pratense HOM05D001703 ORTHO05D012658 6.6e-10 68.2 91 44.0
arahy.Tifrunner.gnm1.ann1.XEJ3YL Arachis hypogaea HOM05D001703 ORTHO05D005708 3.3e-09 65.9 53 62.3
Sabra03G0076100 Salix brachista HOM05D001703 ORTHO05D005708 1.3e-08 63.9 123 39.8
AUR62033018 Chenopodium quinoa HOM05D001703 ORTHO05D005708 4.8e-08 62.0 94 47.9
QL04p035341 Quercus lobata HOM05D001703 ORTHO05D005708 4.8e-08 62.0 46 56.5
TPR.G23946 Trifolium pratense HOM05D001703 ORTHO05D025847 4.8e-08 62.0 36 75.0
Manes.13G145400 Manihot esculenta HOM05D001703 ORTHO05D005708 1.4e-07 60.5 49 55.1
SGA_v2.0_scaffold153G36946 Striga asiatica HOM05D001703 ORTHO05D005708 1.4e-07 60.5 107 42.1
arahy.Tifrunner.gnm1.ann1.D1YXCG Arachis hypogaea HOM05D001703 ORTHO05D005708 1.8e-07 60.1 45 62.2
arahy.Tifrunner.gnm1.ann1.D5QJZZ Arachis hypogaea HOM05D001703 ORTHO05D005708 1.8e-07 60.1 45 62.2
TPR.G10478 Trifolium pratense HOM05D001703 ORTHO05D025847 4.0e-07 58.9 36 72.2
AL5G42800 Arabidopsis lyrata HOM05D001703 ORTHO05D005708 2.6e-06 56.2 79 43.0
QL04p035353 Quercus lobata HOM05D001703 ORTHO05D005708 9.9e-06 54.3 79 48.1


User provided reference genes

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