Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 7.9e-129 463.8 230 100.0
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 6.0e-36 155.2 244 45.1
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.3e-35 154.1 86 86.0
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.0e-32 142.5 116 64.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.2e-30 136.7 219 43.4
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.9e-30 136.3 106 63.2
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 4.9e-30 135.6 97 69.1
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 3.2e-29 132.9 97 67.0
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.2e-29 132.9 106 59.4
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 5.4e-29 132.1 168 49.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 6.6e-27 125.2 102 57.8
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.3e-26 122.9 94 63.8
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 5.6e-26 122.1 106 58.5
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.8e-25 119.8 105 58.1
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.8e-25 119.8 104 54.8
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.8e-25 119.0 178 43.8
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 6.2e-25 118.6 93 62.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.8e-24 117.1 106 55.7
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.4e-24 116.7 92 60.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 3.1e-24 116.3 98 57.1
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 4.0e-24 115.9 110 55.5
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.0e-24 115.9 110 53.6
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.3e-24 115.5 109 54.1
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 6.9e-24 115.2 146 47.3
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.0e-24 114.8 110 50.0
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.5e-23 114.0 94 60.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.0e-23 113.6 117 50.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.0e-23 113.6 114 51.8
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.4e-23 112.8 106 53.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.4e-23 112.8 94 59.6
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 4.4e-23 112.5 93 55.9
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 4.4e-23 112.5 104 53.8
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 9.9e-23 111.3 94 57.4
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.9e-23 111.3 88 54.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.3e-22 110.9 100 55.0
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.3e-22 110.9 105 52.4
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.3e-22 110.9 94 56.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.7e-22 110.5 124 47.6
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.7e-22 110.5 104 51.9
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.7e-22 110.5 103 50.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.2e-22 110.2 99 54.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 2.2e-22 110.2 108 53.7
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.2e-22 110.2 89 57.3
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.9e-22 109.8 98 56.1
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.9e-22 109.8 114 49.1
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 3.8e-22 109.4 87 56.3
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.9e-22 109.0 120 50.0
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.9e-22 109.0 98 54.1
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 4.9e-22 109.0 118 50.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.4e-22 108.6 137 45.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 6.4e-22 108.6 103 53.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 6.4e-22 108.6 87 56.3
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-21 107.8 78 59.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.4e-21 107.5 97 54.6
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.4e-21 107.5 149 43.6
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.9e-21 107.1 98 53.1
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.9e-21 107.1 99 54.5
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.4e-21 106.7 108 50.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.4e-21 106.7 89 57.3
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.4e-21 106.7 116 48.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.2e-21 105.9 102 52.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.4e-21 105.5 103 50.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.4e-21 105.5 92 54.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 7.1e-21 105.1 111 47.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 7.1e-21 105.1 111 47.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.1e-21 105.1 108 50.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.1e-21 105.1 108 50.9
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 7.1e-21 105.1 99 51.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 7.1e-21 105.1 128 46.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 7.1e-21 105.1 104 49.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 9.3e-21 104.8 91 57.1
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.3e-21 104.8 125 46.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 9.3e-21 104.8 108 49.1
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-20 104.4 91 57.1
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.2e-20 104.4 112 48.2
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.2e-20 104.4 101 50.5
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.2e-20 104.4 80 60.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.1e-20 103.6 149 43.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.1e-20 103.6 121 44.6
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.7e-20 103.2 108 50.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.7e-20 103.2 96 51.0
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.7e-20 103.2 96 53.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 3.5e-20 102.8 101 48.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.6e-20 102.4 98 51.0
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.6e-20 102.4 98 51.0
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.6e-20 102.4 98 51.0
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.0e-20 102.1 95 50.5
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.0e-20 102.1 101 47.5
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 6.0e-20 102.1 80 58.8
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 7.8e-20 101.7 104 48.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.8e-20 101.7 98 50.0
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.8e-20 101.7 98 50.0
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 7.8e-20 101.7 116 45.7
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 7.8e-20 101.7 102 52.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.0e-19 101.3 88 51.1
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.0e-19 101.3 95 50.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.0e-19 101.3 100 49.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-19 101.3 100 49.0
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.3e-19 100.9 109 46.8
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.3e-19 100.9 109 46.8
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-19 100.9 104 47.1
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.3e-19 100.9 82 59.8
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-19 100.5 98 49.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.7e-19 100.5 107 46.7
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.3e-19 100.1 90 52.2
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.3e-19 100.1 89 51.7
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.3e-19 100.1 103 46.6
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.0e-19 99.8 149 39.6
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.0e-19 99.8 159 39.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.0e-19 99.8 92 52.2
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.9e-19 99.4 103 46.6
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.9e-19 99.4 104 46.2
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 5.1e-19 99.0 105 48.6
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.6e-19 98.6 100 48.0
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 8.7e-19 98.2 94 47.9
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 8.7e-19 98.2 104 51.9
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 8.7e-19 98.2 87 55.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.1e-18 97.8 99 47.5
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-18 97.8 96 49.0
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.9e-18 97.1 87 54.0
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.9e-18 97.1 87 55.2
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.3e-18 96.3 103 46.6
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.3e-18 96.3 105 45.7
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.3e-18 96.3 102 51.0
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.3e-18 95.1 105 45.7
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 7.3e-18 95.1 105 45.7
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.3e-17 94.4 80 50.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.3e-17 94.4 89 49.4
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 2.8e-17 93.2 96 47.9
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 3.6e-17 92.8 95 49.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.4e-16 90.9 97 45.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.4e-16 90.1 101 46.5
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.9e-16 88.6 101 44.6
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.2e-15 87.8 102 41.2
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.6e-15 86.7 97 46.4
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.5e-15 85.9 101 44.6
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.6e-15 85.1 69 53.6
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-13 81.3 83 44.6
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.4e-13 79.0 82 46.3
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 8.7e-11 71.6 87 42.5
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 9.6e-10 68.2 91 39.6
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.7e-09 66.2 82 41.5
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 8.1e-09 65.1 81 44.4
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.4e-08 64.3 75 42.7
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.3e-08 62.4 112 36.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.9e-06 56.6 67 41.8


User provided reference genes

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