Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 0.0e+00 1125.9 566 100.0
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 5.0e-286 987.3 566 88.5
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 1.2e-255 886.3 565 79.8
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 4.4e-250 867.8 563 77.8
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 5.3e-243 844.3 559 77.6
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 3.1e-235 818.5 567 74.6
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 2.5e-216 755.7 614 65.0
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 5.5e-216 754.6 614 65.3
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 2.3e-214 749.2 495 76.2
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 1.3e-201 706.8 455 79.6
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 2.6e-189 666.0 561 62.6
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.4e-182 643.7 569 58.9
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 1.8e-182 643.3 581 57.7
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.6e-181 639.4 559 58.5
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 1.3e-180 637.1 570 60.2
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 2.2e-180 636.3 568 59.0
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 2.2e-180 636.3 559 58.1
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 2.3e-177 626.3 557 58.3
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 5.0e-177 625.2 560 59.3
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.1e-176 624.0 563 58.3
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.5e-176 623.6 567 58.6
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.5e-173 613.6 560 56.6
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.1e-171 607.4 554 57.9
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 2.4e-171 606.3 552 58.3
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.2e-171 604.4 538 57.4
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 4.6e-170 602.1 559 57.1
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.1e-168 597.4 598 53.7
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.9e-168 596.7 576 54.7
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 2.5e-168 596.3 559 56.4
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.8e-167 592.8 570 55.8
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.8e-166 590.1 577 53.9
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 2.3e-166 589.7 562 55.5
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 4.0e-166 589.0 562 54.6
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 8.9e-166 587.8 580 54.8
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 2.0e-165 586.6 604 54.5
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 7.5e-165 584.7 552 56.5
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 4.9e-164 582.0 553 56.2
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 3.2e-163 579.3 569 55.7
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 3.5e-162 575.9 553 55.5
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 3.5e-162 575.9 618 52.8
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 4.6e-162 575.5 553 55.5
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 4.6e-162 575.5 553 55.7
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 4.6e-162 575.5 564 55.3
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 6.0e-162 575.1 553 54.6
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 1.0e-161 574.3 564 55.5
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 3.9e-161 572.4 553 54.4
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 8.6e-161 571.2 566 54.1
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 1.5e-160 570.5 564 56.2
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 2.1e-159 566.6 557 55.1
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 2.1e-159 566.6 560 53.9
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 2.1e-159 566.6 562 53.9
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 1.8e-158 563.5 553 54.8
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 1.7e-156 557.0 663 48.6
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 2.9e-156 556.2 579 52.5
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 5.4e-155 552.0 573 52.9
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 3.0e-153 546.2 556 52.9
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 3.9e-153 545.8 577 51.8
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 1.1e-152 544.3 562 50.4
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.1e-151 540.0 505 57.2
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 3.6e-151 539.3 582 50.9
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.8e-150 537.0 566 51.4
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.2e-149 534.3 525 57.1
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.9e-149 531.2 501 55.3
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 8.4e-148 528.1 583 51.5
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.5e-144 517.3 564 50.4
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 7.6e-141 505.0 529 53.3
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 4.2e-139 499.2 573 49.2
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 1.2e-138 497.7 582 48.5
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.3e-137 494.2 525 50.5
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 2.2e-132 476.9 586 46.4
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 4.9e-132 475.7 522 51.1
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.1e-131 474.6 564 47.7
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 1.7e-124 450.7 501 49.3
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 7.9e-122 441.8 503 49.1
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.5e-120 437.6 377 58.6
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 9.0e-118 428.3 585 45.5
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 5.1e-105 386.0 571 40.3
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 3.1e-102 376.7 616 38.0
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 5.9e-101 372.5 556 38.8
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 2.1e-98 364.0 442 45.5
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.4e-97 361.3 360 51.4
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.7e-97 359.0 202 87.1
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 3.8e-92 343.2 377 52.5
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 4.2e-91 339.7 282 61.7
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 9.4e-91 338.6 374 54.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.4e-89 334.7 360 53.1
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 1.1e-88 331.6 281 59.8
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 8.2e-87 325.5 446 44.6
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.1e-86 323.6 194 85.6
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.1e-86 323.6 194 85.6
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 2.7e-77 293.9 301 51.2
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 5.4e-70 269.6 254 58.3
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 5.0e-68 263.1 441 39.5
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 4.2e-67 260.0 284 49.3
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 8.3e-55 219.2 214 56.1
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 3.1e-49 200.7 240 47.9
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 8.1e-42 176.0 198 53.0
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 3.2e-38 164.1 190 50.5
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.2e-34 152.1 220 42.3
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 5.2e-33 146.7 124 55.6
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 4.9e-31 140.2 189 45.5
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 1.3e-28 132.1 96 63.5
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 1.1e-27 129.0 121 55.4
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.2e-26 125.6 118 48.3
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 6.9e-25 119.8 146 50.7
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 9.9e-16 89.4 135 42.2
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.1e-10 71.6 68 55.9
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 9.0e-09 66.2 377 26.0
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 9.9e-08 62.8 148 33.8


User provided reference genes

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