Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 7.5e-236 820.1 400 100.0
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 9.2e-218 760.0 403 93.5
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 2.0e-204 715.7 403 88.6
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 3.4e-196 688.3 404 84.4
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.3e-192 676.4 405 83.2
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 8.7e-192 673.7 376 89.9
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 8.1e-190 667.2 403 81.9
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.2e-185 653.3 405 81.0
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 4.8e-182 641.3 378 83.1
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 3.1e-181 638.6 379 82.8
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 9.0e-181 637.1 380 82.9
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 8.4e-179 630.6 378 82.0
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 2.5e-178 629.0 405 77.3
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 3.2e-178 628.6 407 76.9
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 6.1e-177 624.4 403 77.4
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 1.3e-176 623.2 402 76.6
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.3e-176 622.5 403 77.4
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 3.9e-176 621.7 405 75.8
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 7.4e-175 617.5 390 77.9
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 3.7e-174 615.1 383 79.1
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 3.7e-174 615.1 343 86.0
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 4.8e-174 614.8 345 85.8
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 6.3e-174 614.4 380 80.0
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 8.2e-174 614.0 345 84.9
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.1e-173 613.6 407 76.2
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.8e-173 612.8 383 79.1
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 2.4e-173 612.5 345 84.3
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 3.1e-173 612.1 353 83.0
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 4.1e-173 611.7 382 79.1
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 6.9e-173 610.9 400 75.8
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 6.9e-173 610.9 394 76.6
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 4.5e-172 608.2 327 89.3
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 1.3e-171 606.7 376 79.0
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 1.3e-171 606.7 371 78.4
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 2.5e-170 602.4 401 74.3
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.5e-170 602.4 365 81.4
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 4.2e-170 601.7 346 81.8
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 5.5e-170 601.3 400 74.2
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 7.2e-170 600.9 361 79.8
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 9.4e-170 600.5 379 78.1
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 9.4e-170 600.5 365 81.6
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 4.6e-169 598.2 372 78.2
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 6.1e-169 597.8 365 81.1
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 7.9e-169 597.4 345 82.0
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 1.0e-168 597.0 375 77.9
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.0e-168 597.0 352 81.0
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.0e-168 597.0 382 77.2
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.4e-168 596.7 345 82.0
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 1.4e-168 596.7 364 78.8
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.0e-168 595.5 400 74.0
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.0e-168 595.5 351 83.2
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 3.0e-168 595.5 344 82.3
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 3.0e-168 595.5 412 73.1
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 3.9e-168 595.1 400 74.2
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 5.1e-168 594.7 400 74.0
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 5.1e-168 594.7 365 80.5
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 5.1e-168 594.7 372 77.7
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 8.8e-168 594.0 348 81.0
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 1.5e-167 593.2 371 77.4
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 2.0e-167 592.8 403 73.0
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 2.0e-167 592.8 364 78.8
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.3e-167 592.0 372 76.9
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 3.3e-167 592.0 345 82.0
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 5.7e-167 591.3 345 81.2
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 7.4e-167 590.9 391 73.4
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 7.4e-167 590.9 391 75.2
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 1.3e-166 590.1 345 81.4
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.3e-166 590.1 347 82.1
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 1.7e-166 589.7 354 81.6
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 2.2e-166 589.3 348 81.9
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 3.7e-166 588.6 345 80.3
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 4.8e-166 588.2 345 80.3
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 6.3e-166 587.8 361 78.7
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 6.3e-166 587.8 338 82.5
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 1.4e-165 586.6 372 76.9
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.8e-165 586.3 345 80.3
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 3.1e-165 585.5 345 80.6
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 3.1e-165 585.5 352 79.8
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 4.1e-165 585.1 319 87.5
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 1.5e-164 583.2 359 77.7
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 2.0e-164 582.8 462 66.7
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 2.6e-164 582.4 345 81.4
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 4.5e-164 581.6 353 80.5
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 4.5e-164 581.6 359 77.4
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 1.3e-163 580.1 345 80.0
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 6.5e-163 577.8 345 80.0
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.4e-162 576.6 345 79.1
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 5.5e-162 574.7 345 79.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.6e-161 573.2 345 78.6
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 3.6e-161 572.0 345 77.7
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 6.1e-161 571.2 366 76.0
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 7.9e-161 570.9 370 73.0
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 3.3e-159 565.5 400 69.8
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 7.4e-159 564.3 333 81.1
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 6.3e-158 561.2 371 72.2
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 2.9e-155 552.4 345 75.9
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.6e-151 539.3 348 75.6
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 4.4e-151 538.5 322 80.1
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 1.6e-145 520.0 363 69.1
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 1.8e-144 516.5 335 73.1
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.1e-141 507.3 402 67.2
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.4e-141 506.9 380 64.2
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 4.1e-141 505.4 356 70.5
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 7.0e-141 504.6 378 69.6
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 2.9e-139 499.2 355 69.6
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 2.5e-138 496.1 333 69.7
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 2.4e-133 479.6 292 83.9
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 2.9e-131 472.6 397 63.0
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.7e-124 449.5 400 60.5
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 1.2e-119 434.1 329 61.7
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 3.2e-117 426.0 269 78.4
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 4.6e-116 422.2 283 74.6
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 9.5e-114 414.5 376 56.1
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 2.4e-109 399.8 287 69.3
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 4.6e-108 395.6 338 55.6
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 7.8e-108 394.8 241 80.1
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 2.9e-102 376.3 327 57.2
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 8.6e-99 364.8 369 50.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.6e-71 273.5 287 47.0
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 5.1e-67 259.2 192 68.2
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 6.3e-65 252.3 210 61.4
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 2.1e-60 237.3 164 68.9
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 1.3e-46 191.4 173 57.8
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 3.8e-46 189.9 131 71.0
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 2.7e-15 87.4 90 52.2
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 2.7e-15 87.4 90 52.2
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 3.5e-15 87.0 165 37.6
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 9.8e-10 68.9 35 85.7


User provided reference genes

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