Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 6.7e-298 1026.5 510 100.0
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.5e-268 928.3 509 90.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.0e-266 921.0 511 88.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 8.9e-266 919.8 509 88.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.4e-263 911.8 510 88.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.3e-252 874.8 434 99.8
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-247 859.8 510 83.5
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.5e-244 849.4 510 81.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.7e-243 844.3 510 82.2
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.2e-243 844.0 511 82.0
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 3.2e-239 831.6 510 81.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.3e-236 821.6 511 79.1
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.6e-236 820.1 511 79.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-234 815.5 511 78.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 4.0e-234 814.7 511 79.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.2e-206 723.4 506 69.8
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.8e-205 719.5 509 69.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.0e-205 718.8 510 69.6
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 6.7e-205 717.6 510 69.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-204 714.1 510 69.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.8e-203 711.4 510 68.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.1e-202 710.3 509 68.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.1e-202 708.8 510 69.0
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.1e-202 708.4 510 68.4
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.2e-201 706.8 512 68.2
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.5e-201 706.4 509 68.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.4e-201 705.3 509 68.0
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.7e-201 704.1 518 68.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.3e-200 703.4 513 67.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 7.2e-199 697.6 510 68.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 9.4e-199 697.2 512 68.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.2e-198 696.8 512 67.6
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 8.8e-197 690.6 510 68.0
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.6e-196 689.1 532 64.7
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 5.7e-196 688.0 511 67.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-196 687.6 514 67.5
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.7e-195 686.4 510 66.7
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.2e-195 684.1 513 66.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.1e-194 680.6 510 66.7
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.1e-194 680.6 510 66.7
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 7.7e-193 677.6 517 66.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.8e-192 675.2 509 64.8
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.0e-192 674.9 510 65.9
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-191 673.3 510 66.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-191 672.5 510 66.5
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.5e-191 671.4 509 66.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.2e-191 671.0 509 67.0
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.1e-190 669.5 596 59.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.6e-190 668.7 510 66.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 6.1e-190 667.9 510 64.5
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 7.9e-190 667.5 510 65.5
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.0e-188 662.9 524 63.4
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.3e-187 660.2 503 65.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.8e-187 659.1 505 64.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 7.0e-186 654.4 513 63.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.5e-185 652.1 513 63.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 2.2e-184 649.4 510 65.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.9e-184 649.0 509 64.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 5.0e-184 648.3 503 64.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.9e-183 646.4 511 63.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 7.2e-183 644.4 504 65.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.2e-182 643.7 509 63.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.6e-182 643.3 473 65.3
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.1e-182 642.9 511 63.4
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.2e-180 637.1 512 64.6
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.5e-180 636.7 509 62.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.6e-180 636.0 571 57.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 3.3e-180 635.6 492 63.2
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.3e-179 633.6 460 66.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.4e-178 630.2 523 61.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.8e-178 629.8 511 61.6
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.4e-178 629.4 509 61.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 4.1e-178 628.6 509 61.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 4.1e-178 628.6 457 66.1
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 7.0e-178 627.9 509 61.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.2e-177 627.1 457 66.1
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.2e-177 627.1 457 66.1
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.6e-177 626.7 510 61.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.7e-177 625.9 457 66.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.5e-177 625.2 517 61.5
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.7e-176 623.2 514 61.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 3.8e-176 622.1 510 61.4
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.0e-176 621.7 510 62.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 3.2e-175 619.0 511 62.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.6e-174 616.7 506 59.7
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.1e-174 616.3 506 60.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.7e-174 615.1 510 62.4
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.1e-174 614.8 499 62.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.0e-173 612.1 510 62.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.0e-172 609.8 500 60.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.0e-172 609.8 510 61.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 8.3e-171 604.4 458 65.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.8e-170 603.2 544 57.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.2e-169 600.5 434 67.7
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 5.9e-169 598.2 436 66.5
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 8.6e-168 594.3 545 55.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 6.8e-165 584.7 458 64.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 9.8e-164 580.9 460 64.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 8.3e-163 577.8 502 60.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.5e-161 572.0 414 67.4
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.1e-159 567.4 491 58.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.8e-157 560.1 504 56.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-154 550.8 355 74.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 5.6e-151 538.5 456 60.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 3.5e-145 519.2 518 51.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.3e-144 516.5 368 70.9
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.5e-140 503.8 379 65.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-140 502.7 368 65.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.6e-137 492.3 412 59.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.4e-133 480.7 457 54.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-131 473.0 447 55.7
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 5.4e-130 468.8 384 61.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 6.4e-115 418.7 470 48.1
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.1e-113 413.7 478 45.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.6e-108 395.2 496 44.8
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-106 390.6 388 54.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.6e-105 386.0 278 68.3
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-103 381.3 439 46.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-96 357.5 320 57.8
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.6e-81 307.8 489 38.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 6.1e-81 305.8 395 47.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 6.3e-70 269.2 460 36.5
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.9e-67 260.4 470 37.7
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.5e-60 236.5 241 53.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.0e-56 223.4 164 69.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.7e-55 219.5 374 35.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.2e-52 211.8 482 32.8
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 9.5e-50 202.2 151 64.2
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 6.0e-36 156.4 210 41.4
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 5.0e-35 153.3 248 37.9
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-34 152.1 100 70.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-32 145.2 92 76.1
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 4.4e-31 140.2 72 95.8
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 7.5e-31 139.4 134 57.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.3e-26 124.0 346 27.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-20 105.1 110 52.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-13 80.9 58 67.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.0e-11 75.9 49 73.5
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.1e-11 73.6 44 72.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-10 70.9 66 62.1
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 3.4e-07 60.8 227 26.9
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 2.2e-06 58.2 457 21.4
DCAR_000648 Daucus carota HOM05D000686 ORTHO05D000512 2.2e-06 58.2 239 28.5
Rhsim04G0160100 Rhododendron simsii HOM05D000686 ORTHO05D000512 2.2e-06 58.2 240 29.2
Lj3g0012363 Lotus japonicus HOM05D053840 ORTHO05D036509 2.9e-06 57.8 37 75.7
Lj6g0008505 Lotus japonicus HOM05D053840 ORTHO05D036509 2.9e-06 57.8 37 75.7
Duzib177G1014 Durio zibethinus HOM05D000686 ORTHO05D000512 4.9e-06 57.0 419 21.5


User provided reference genes

Program Settings