Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g060330 Medicago truncatula HOM05D001344 ORTHO05D026328 2.2e-24 114.8 56 100.0
TPR.G4420 Trifolium pratense HOM05D001344 ORTHO05D004319 2.2e-16 88.2 46 89.1
Lj2g0001704 Lotus japonicus HOM05D001344 ORTHO05D004319 2.9e-16 87.8 46 89.1
Medtr5g035190 Medicago truncatula HOM05D001344 ORTHO05D004319 2.9e-16 87.8 46 89.1
arahy.Tifrunner.gnm1.ann1.1RGA44 Arachis hypogaea HOM05D001344 ORTHO05D004319 4.9e-16 87.0 46 89.1
arahy.Tifrunner.gnm1.ann1.8F47NR Arachis hypogaea HOM05D001344 ORTHO05D004319 4.9e-16 87.0 46 89.1
Psat2g110480 Pisum sativum HOM05D001344 ORTHO05D004319 8.3e-16 86.3 53 79.2
Actinidia23915 Actinidia chinensis HOM05D001344 ORTHO05D026328 1.1e-15 85.9 46 89.1
Actinidia34430 Actinidia chinensis HOM05D001344 ORTHO05D004319 1.1e-15 85.9 46 89.1
Dinv17053 Davidia involucrata HOM05D001344 ORTHO05D004319 1.1e-15 85.9 52 84.6
Dinv42997 Davidia involucrata HOM05D001344 ORTHO05D004319 1.1e-15 85.9 52 84.6
Dinv43100 Davidia involucrata HOM05D001344 ORTHO05D004319 1.1e-15 85.9 52 84.6
Glyma.01G035100 Glycine max HOM05D001344 ORTHO05D004319 1.1e-15 85.9 46 87.0
Glyma.02G030900 Glycine max HOM05D001344 ORTHO05D004319 1.1e-15 85.9 46 87.0
Medtr8g063210 Medicago truncatula HOM05D001344 ORTHO05D004319 1.1e-15 85.9 54 79.6
VMungo1215G0127 Vigna mungo HOM05D001344 ORTHO05D004319 1.4e-15 85.5 46 87.0
arahy.Tifrunner.gnm1.ann1.4UPT2U Arachis hypogaea HOM05D001344 ORTHO05D004319 1.9e-15 85.1 46 84.8
CANSAT54G0571 Cannabis sativa HOM05D001344 ORTHO05D004319 1.9e-15 85.1 46 89.1
Lsat_1_v5_gn_9_24081 Lactuca sativa HOM05D001344 ORTHO05D004319 2.4e-15 84.7 55 76.4
PGR119G2106 Punica granatum HOM05D001344 ORTHO05D004319 2.4e-15 84.7 46 89.1
CSS0049702 Camellia sinensis var. sinensis HOM05D001344 ORTHO05D004319 3.2e-15 84.3 46 87.0
Ciclev10029052m.g Citrus clementina HOM05D001344 ORTHO05D004319 3.2e-15 84.3 46 87.0
Lj1A146T70 Lonicera japonica HOM05D001344 ORTHO05D004319 3.2e-15 84.3 48 83.3
MSTRG.12655 Avicennia marina HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 89.1
FvH4_3g37020 Fragaria vesca HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
FAN16G2767 Fragaria x ananassa HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
FAN21G1343 Fragaria x ananassa HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
MD03G1085200 Malus domestica HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
Manes.01G168500 Manihot esculenta HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
Nitab4.5_0005607g0020 Nicotiana tabacum HOM05D001344 ORTHO05D004319 4.1e-15 84.0 49 85.7
RcHm_v2.0_Chr5g0066411 Rosa chinensis HOM05D001344 ORTHO05D004319 4.1e-15 84.0 46 87.0
Sabra16G0148700 Salix brachista HOM05D001344 ORTHO05D004319 4.1e-15 84.0 50 82.0
arahy.Tifrunner.gnm1.ann1.IBW8RK Arachis hypogaea HOM05D001344 ORTHO05D004319 5.4e-15 83.6 46 82.6
CAN.G394.78 Capsicum annuum HOM05D001344 ORTHO05D004319 5.4e-15 83.6 46 89.1
Cpa.g.sc81.89 Carica papaya HOM05D001344 ORTHO05D004319 5.4e-15 83.6 46 87.0
CiPaw.14G064700 Carya illinoinensis HOM05D001344 ORTHO05D004319 5.4e-15 83.6 52 82.7
Rhsim01G0232500 Rhododendron simsii HOM05D001344 ORTHO05D004319 5.4e-15 83.6 46 87.0
TWI31G1357 Tripterygium wilfordii HOM05D001344 ORTHO05D004319 5.4e-15 83.6 46 87.0
Potri.001G245300 Populus trichocarpa HOM05D001344 ORTHO05D004319 7.0e-15 83.2 46 87.0
QL01p028015 Quercus lobata HOM05D001344 ORTHO05D004319 7.0e-15 83.2 46 87.0
Atru.chr3.4008 Acer truncatum HOM05D001344 ORTHO05D004319 9.2e-15 82.8 46 84.8
DCAR_005934 Daucus carota HOM05D001344 ORTHO05D004319 9.2e-15 82.8 48 83.3
Migut.D00873 Erythranthe guttata HOM05D001344 ORTHO05D004319 9.2e-15 82.8 46 84.8
HanXRQChr08g0237411 Helianthus annuus HOM05D001344 ORTHO05D004319 9.2e-15 82.8 46 87.0
Haze_24186 Corylus avellana HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 84.8
Eucgr.J02002 Eucalyptus grandis HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 84.8
FAN25G3201 Fragaria x ananassa HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 84.8
MD11G1093000 Malus domestica HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 84.8
Prupe.6G068700 Prunus persica HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 84.8
Sopen06g032820 Solanum pennellii HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 87.0
PGSC0003DMG400030422 Solanum tuberosum HOM05D001344 ORTHO05D004319 1.2e-14 82.4 46 87.0
Peaxi162Scf00481g00049 Petunia axillaris HOM05D001344 ORTHO05D004319 1.6e-14 82.0 46 87.0
Potri.009G037400 Populus trichocarpa HOM05D001344 ORTHO05D004319 1.6e-14 82.0 46 82.6
SalBow2G3551 Salvia bowleyana HOM05D001344 ORTHO05D004319 1.6e-14 82.0 46 84.8
TWI75G0572 Tripterygium wilfordii HOM05D001344 ORTHO05D004319 1.6e-14 82.0 46 87.0
vmacro03024 Vaccinium macrocarpon HOM05D001344 ORTHO05D004319 1.6e-14 82.0 46 84.8
Cc01_g13410 Coffea canephora HOM05D001344 ORTHO05D004319 2.0e-14 81.6 46 87.0
Aqoxy1G00849 Aquilegia oxysepala HOM05D001344 ORTHO05D004319 3.5e-14 80.9 46 87.0
Hma1.2p1_0615F.1_g189630 Hydrangea macrophylla HOM05D001344 ORTHO05D004319 3.5e-14 80.9 46 87.0
HanXRQChr01g0010671 Helianthus annuus HOM05D001344 ORTHO05D004319 4.6e-14 80.5 46 80.4
Lalb_Chr09g0335131 Lupinus albus HOM05D001344 ORTHO05D004319 4.6e-14 80.5 46 80.4
Nitab4.5_0000839g0130 Nicotiana tabacum HOM05D001344 ORTHO05D026328 4.6e-14 80.5 45 86.7
Rhsim13G0076800 Rhododendron simsii HOM05D001344 ORTHO05D004319 4.6e-14 80.5 46 84.8
CsaV3_1G034570 Cucumis sativus L. HOM05D001344 ORTHO05D026328 6.0e-14 80.1 48 79.2
CsaV3_1G035670 Cucumis sativus L. HOM05D001344 ORTHO05D004319 6.0e-14 80.1 48 79.2
ECA247G0826 Erigeron canadensis HOM05D001344 ORTHO05D004319 6.0e-14 80.1 46 82.6
Lalb_Chr09g0326471 Lupinus albus HOM05D001344 ORTHO05D004319 6.0e-14 80.1 46 82.6
Sed0004821 Sechium edule HOM05D001344 ORTHO05D004319 6.0e-14 80.1 46 82.6
ClCG03G001240 Citrullus lanatus HOM05D001344 ORTHO05D004319 7.8e-14 79.7 46 82.6
MELO3C020602.2 Cucumis melo HOM05D001344 ORTHO05D004319 7.8e-14 79.7 46 82.6
Lalb_Chr16g0382441 Lupinus albus HOM05D001344 ORTHO05D004319 7.8e-14 79.7 46 82.6
DCAR_007426 Daucus carota HOM05D001344 ORTHO05D004319 1.0e-13 79.3 46 78.3
vmacro14561 Vaccinium macrocarpon HOM05D001344 ORTHO05D004319 1.0e-13 79.3 46 80.4
GSVIVG01016483001 Vitis vinifera HOM05D001344 ORTHO05D004319 1.0e-13 79.3 46 84.8
MSTRG.17826 Avicennia marina HOM05D001344 ORTHO05D004319 1.3e-13 79.0 46 82.6
CiPaw.13G087900 Carya illinoinensis HOM05D001344 ORTHO05D004319 1.3e-13 79.0 45 84.4
Aa31LG5G7040 Aethionema arabicum HOM05D001344 ORTHO05D004319 1.7e-13 78.6 46 82.6
Lalb_Chr16g0392481 Lupinus albus HOM05D001344 ORTHO05D004319 1.7e-13 78.6 46 80.4
Sed0016312 Sechium edule HOM05D001344 ORTHO05D004319 1.7e-13 78.6 46 80.4
SGA_v2.0_scaffold54G19465 Striga asiatica HOM05D001344 ORTHO05D004319 1.7e-13 78.6 53 77.4
PSO063G7680 Papaver somniferum HOM05D001344 ORTHO05D004319 2.3e-13 78.2 46 82.6
GSVIVG01024874001 Vitis vinifera HOM05D001344 ORTHO05D004319 3.0e-13 77.8 46 80.4
Thhalv10008485m.g Eutrema salsugineum HOM05D001344 ORTHO05D004319 3.9e-13 77.4 46 80.4
TAR633G0925 Trochodendron aralioides HOM05D001344 ORTHO05D004319 3.9e-13 77.4 46 84.8
Aa31LG1G6700 Aethionema arabicum HOM05D001344 ORTHO05D004319 5.0e-13 77.0 53 75.5
Lsat_1_v5_gn_5_169701 Lactuca sativa HOM05D001344 ORTHO05D004319 5.0e-13 77.0 46 80.4
Sp1g06160 Schrenkiella parvula HOM05D001344 ORTHO05D004319 5.0e-13 77.0 46 80.4
TAR623G0631 Trochodendron aralioides HOM05D001344 ORTHO05D004319 5.0e-13 77.0 46 82.6
ECA248G1979 Erigeron canadensis HOM05D001344 ORTHO05D004319 6.6e-13 76.6 46 78.3
Medtr6g039970 Medicago truncatula HOM05D001344 ORTHO05D004319 6.6e-13 76.6 54 70.4
Phvul.002G074300 Phaseolus vulgaris HOM05D001344 ORTHO05D004319 6.6e-13 76.6 46 76.1
CAN.G141.16 Capsicum annuum HOM05D001344 ORTHO05D004319 8.6e-13 76.3 46 78.3
Duzib170G0656 Durio zibethinus HOM05D001344 ORTHO05D004319 8.6e-13 76.3 46 82.6
Nitab4.5_0000102g0360 Nicotiana tabacum HOM05D001344 ORTHO05D004319 8.6e-13 76.3 46 78.3
Hund18884 Selenicereus undatus HOM05D001344 ORTHO05D004319 8.6e-13 76.3 49 75.5
Carub.0001s0673 Capsella rubella HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 78.3
AUR62001729 Chenopodium quinoa HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 78.3
AUR62020046 Chenopodium quinoa HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 78.3
COL.COLO4_18584 Corchorus olitorius HOM05D001344 ORTHO05D004319 1.1e-12 75.9 48 79.2
Gohir.A03G045300 Gossypium hirsutum HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 84.8
Gohir.D03G121700 Gossypium hirsutum HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 84.8
Gorai.003G128800 Gossypium raimondii HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 84.8
Nn2g11230 Nelumbo nucifera HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 82.6
THA.LOC104826306 Tarenaya hassleriana HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 80.4
Thecc.09G314000 Theobroma cacao HOM05D001344 ORTHO05D004319 1.1e-12 75.9 46 84.8
AL1G17570 Arabidopsis lyrata HOM05D001344 ORTHO05D004319 1.5e-12 75.5 46 78.3
EL10Ac7g16077 Beta vulgaris HOM05D001344 ORTHO05D004319 1.5e-12 75.5 46 78.3
MBI14_g43664_MAGBIO Magnolia biondii HOM05D001344 ORTHO05D004319 1.5e-12 75.5 46 84.8
Nitab4.5_0002582g0040 Nicotiana tabacum HOM05D001344 ORTHO05D004319 1.5e-12 75.5 46 78.3
Ah.08g220190 Amaranthus hybridus HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 78.3
AT1G07420 Arabidopsis thaliana HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 78.3
BcaC07g42000 Brassica carinata HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 78.3
C08p50600 Brassica napus HOM05D000064 ORTHO05D004319 1.9e-12 75.1 46 78.3
BolC8t52587H Brassica oleracea HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 78.3
Nn2g13474 Nelumbo nucifera HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 82.6
Peaxi162Scf00265g00412 Petunia axillaris HOM05D001344 ORTHO05D004319 1.9e-12 75.1 46 78.3
BcaB02g06742 Brassica carinata HOM05D001344 ORTHO05D004319 2.5e-12 74.7 46 76.1
BcaB03g13396 Brassica carinata HOM05D001344 ORTHO05D004319 3.3e-12 74.3 46 76.1
BcaC05g24702 Brassica carinata HOM05D000064 ORTHO05D004319 3.3e-12 74.3 46 76.1
A10p05970 Brassica napus HOM05D000064 ORTHO05D004319 3.3e-12 74.3 46 76.1
C05p05450 Brassica napus HOM05D000064 ORTHO05D004319 3.3e-12 74.3 46 76.1
BolC5t29317H Brassica oleracea HOM05D000064 ORTHO05D004319 3.3e-12 74.3 46 76.1
VMungo1215G2937 Vigna mungo HOM05D001344 ORTHO05D004319 3.3e-12 74.3 46 73.9
A08p35680 Brassica napus HOM05D001344 ORTHO05D004319 4.3e-12 73.9 46 76.1
C08p03010 Brassica napus HOM05D001344 ORTHO05D004319 4.3e-12 73.9 46 76.1
BolC8t47102H Brassica oleracea HOM05D001344 ORTHO05D004319 4.3e-12 73.9 46 76.1
BraA08t35474Z Brassica rapa HOM05D001344 ORTHO05D004319 4.3e-12 73.9 46 76.1
BraA10t42859Z Brassica rapa HOM05D000064 ORTHO05D004319 4.3e-12 73.9 46 76.1
Hund04915 Selenicereus undatus HOM05D001344 ORTHO05D004319 4.3e-12 73.9 46 76.1
Duzib150G0391 Durio zibethinus HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 80.4
Thhalv10017113m.g Eutrema salsugineum HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 78.3
Gohir.A13G225900 Gossypium hirsutum HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 80.4
Gohir.D13G231300 Gossypium hirsutum HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 80.4
Gorai.013G261900 Gossypium raimondii HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 80.4
THA.LOC104815774 Tarenaya hassleriana HOM05D001344 ORTHO05D004319 9.5e-12 72.8 46 78.3
AL4G23950 Arabidopsis lyrata HOM05D001344 ORTHO05D004319 1.2e-11 72.4 46 73.9
AT2G29390 Arabidopsis thaliana HOM05D001344 ORTHO05D004319 1.2e-11 72.4 46 73.9
MBI05_g35180_MAGBIO Magnolia biondii HOM05D001344 ORTHO05D004319 1.6e-11 72.0 46 78.3
BcaC07g42466 Brassica carinata HOM05D001344 ORTHO05D004319 3.6e-11 70.9 46 73.9
Sp4g12120 Schrenkiella parvula HOM05D001344 ORTHO05D004319 4.7e-11 70.5 46 71.7
Carub.0004s1045 Capsella rubella HOM05D001344 ORTHO05D004319 6.2e-11 70.1 46 71.7
BolC4t27374H Brassica oleracea HOM05D001344 ORTHO05D004319 1.4e-10 68.9 49 67.3
CDE02G0769 Ceratophyllum demersum HOM05D001344 ORTHO05D004319 2.3e-10 68.2 46 73.9
BcaB06g28302 Brassica carinata HOM05D001344 ORTHO05D004319 3.1e-10 67.8 46 67.4
BcaC02g08089 Brassica carinata HOM05D001344 ORTHO05D004319 4.0e-10 67.4 49 65.3
Manes.02G127900 Manihot esculenta HOM05D001344 ORTHO05D004319 4.0e-10 67.4 36 88.9
A04p22410 Brassica napus HOM05D001344 ORTHO05D004319 5.2e-10 67.0 54 61.1
BraA04t17789Z Brassica rapa HOM05D001344 ORTHO05D004319 5.2e-10 67.0 58 60.3
C04p58560 Brassica napus HOM05D001344 ORTHO05D004319 6.8e-10 66.6 50 66.0
CDE04G1412 Ceratophyllum demersum HOM05D001344 ORTHO05D004319 1.2e-09 65.9 46 71.7
PGSC0003DMG400002156 Solanum tuberosum HOM05D001344 ORTHO05D004319 1.2e-09 65.9 46 65.2
Solyc06g005750.3 Solanum lycopersicum HOM05D001344 ORTHO05D004319 2.6e-09 64.7 46 63.0
Sopen06g001740 Solanum pennellii HOM05D001344 ORTHO05D004319 2.6e-09 64.7 46 63.0
HPP92_027962 Vanilla planifolia HOM05D001344 ORTHO05D004319 3.4e-09 64.3 46 71.7
Os07g0101500 Oryza sativa ssp. japonica HOM05D001344 ORTHO05D004319 5.8e-09 63.5 46 69.6
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.8e-09 63.5 49 67.3
Pp3c11_23950 Physcomitrium patens HOM05D001344 ORTHO05D004319 2.9e-08 61.2 46 65.2
Pp3c7_1450 Physcomitrium patens HOM05D001344 ORTHO05D004319 2.9e-08 61.2 46 65.2
SMO115G0130 Selaginella moellendorffii HOM05D001344 ORTHO05D004319 2.4e-07 58.2 47 63.8
SMO146G0363 Selaginella moellendorffii HOM05D001344 ORTHO05D004319 2.1e-06 55.1 50 60.0
Mapoly0066s0107 Marchantia polymorpha HOM05D001344 ORTHO05D004319 2.7e-06 54.7 47 63.8


User provided reference genes

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