Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 2.1e-88 328.9 162 100.0
Ca_02709_v3 Cicer arietinum L. HOM05D008563 ORTHO05D009956 2.2e-48 196.1 172 64.5
TPR.G15318 Trifolium pratense HOM05D008563 ORTHO05D009802 4.7e-35 151.8 159 57.9
Psat5g232520 Pisum sativum HOM05D008563 ORTHO05D009802 4.5e-30 135.2 170 51.2
Phvul.009G190900 Phaseolus vulgaris HOM05D008563 ORTHO05D009802 1.5e-17 93.6 150 45.3
Lj1g0007009 Lotus japonicus HOM05D008563 ORTHO05D009802 1.2e-14 84.0 153 45.1
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 1.9e-12 76.6 158 41.8
VMungo1309G1047 Vigna mungo HOM05D008563 ORTHO05D009802 5.5e-12 75.1 150 40.0
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 7.2e-12 74.7 169 40.2
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 9.5e-12 74.3 166 41.6
Psat4g045520 Pisum sativum HOM05D008563 ORTHO05D009802 9.5e-12 74.3 160 41.9
Glyma.04G157900 Glycine max HOM05D008563 ORTHO05D009956 3.6e-11 72.4 79 54.4
Glyma.06G207600 Glycine max HOM05D008563 ORTHO05D009802 4.7e-11 72.0 166 36.7
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 2.3e-10 69.7 67 59.7
Medtr4g112870 Medicago truncatula HOM05D008563 ORTHO05D009802 3.0e-10 69.3 165 40.6
CSS0016849 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 8.8e-10 67.8 78 52.6
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 2.0e-09 66.6 67 58.2
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 4.4e-09 65.5 163 41.7
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 4.4e-09 65.5 163 41.7
PGSC0003DMG400024516 Solanum tuberosum HOM05D014920 ORTHO05D009802 4.4e-09 65.5 81 51.9
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 5.7e-09 65.1 101 40.6
CSS0048960 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 7.5e-09 64.7 78 50.0
CiPaw.15G117600 Carya illinoinensis HOM05D008563 ORTHO05D009802 9.8e-09 64.3 123 40.7
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 1.3e-08 63.9 91 45.1
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 1.3e-08 63.9 153 40.5
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 1.7e-08 63.5 69 55.1
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 2.2e-08 63.2 115 40.9
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 2.2e-08 63.2 115 40.9
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 2.2e-08 63.2 115 40.9
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 4.9e-08 62.0 80 50.0
BcaC06g30842 Brassica carinata HOM05D009227 ORTHO05D009956 4.9e-08 62.0 133 39.1
Glyma.02G126600 Glycine max HOM05D018202 ORTHO05D020778 8.3e-08 61.2 118 40.7
Gohir.A13G093400 Gossypium hirsutum HOM05D018013 ORTHO05D013371 8.3e-08 61.2 79 48.1
A06p39660 Brassica napus HOM05D009227 ORTHO05D009956 1.1e-07 60.8 119 38.7
BraA06t26881Z Brassica rapa HOM05D009227 ORTHO05D009956 1.1e-07 60.8 119 38.7
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 1.1e-07 60.8 69 49.3
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 1.4e-07 60.5 86 43.0
RcHm_v2.0_Chr7g0184051 Rosa chinensis HOM05D021981 ORTHO05D009802 1.4e-07 60.5 75 48.0
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 1.4e-07 60.5 154 38.3
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 1.8e-07 60.1 138 34.1
CANSAT64G2743 Cannabis sativa HOM05D008889 ORTHO05D009956 2.4e-07 59.7 106 39.6
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 2.4e-07 59.7 120 37.5
DCAR_011590 Daucus carota HOM05D065511 ORTHO05D009802 2.4e-07 59.7 141 37.6
Gorai.013G103000 Gossypium raimondii HOM05D018013 ORTHO05D013371 2.4e-07 59.7 84 48.8
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 3.1e-07 59.3 72 45.8
CARHR264020 Cardamine hirsuta HOM05D009227 ORTHO05D009956 4.1e-07 58.9 68 48.5
Duzib133G1477 Durio zibethinus HOM05D008889 ORTHO05D009956 4.1e-07 58.9 79 45.6
Lalb_Chr10g0092501 Lupinus albus HOM05D008889 ORTHO05D009956 4.1e-07 58.9 67 55.2
Sp2g18210 Schrenkiella parvula HOM05D009227 ORTHO05D009956 4.1e-07 58.9 134 36.6
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 4.1e-07 58.9 67 49.3
FAN13G1731 Fragaria x ananassa HOM05D021981 ORTHO05D009802 5.4e-07 58.5 91 42.9
Gohir.D13G089850 Gossypium hirsutum HOM05D018013 ORTHO05D013371 5.4e-07 58.5 79 49.4
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 5.4e-07 58.5 145 35.2
Phvul.003G181300 Phaseolus vulgaris HOM05D024738 ORTHO05D009802 5.4e-07 58.5 159 39.0
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 5.4e-07 58.5 102 40.2
QL02p063786 Quercus lobata HOM05D009227 ORTHO05D009956 5.4e-07 58.5 74 48.6
unitig_27.g25224 Utricularia gibba HOM05D008889 ORTHO05D009956 5.4e-07 58.5 68 50.0
A07p12790 Brassica napus HOM05D008861 ORTHO05D011066 7.0e-07 58.2 82 46.3
BraA07t29056Z Brassica rapa HOM05D008861 ORTHO05D011066 7.0e-07 58.2 82 46.3
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 7.0e-07 58.2 101 40.6
unitig_699.g19509 Utricularia gibba HOM05D014692 ORTHO05D014734 7.0e-07 58.2 67 53.7
Cpa.g.sc3.202 Carica papaya HOM05D014920 ORTHO05D009802 9.2e-07 57.8 91 47.3
FAN08G2886 Fragaria x ananassa HOM05D021981 ORTHO05D009802 9.2e-07 57.8 88 44.3
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 9.2e-07 57.8 81 46.9
Sopen06g026600 Solanum pennellii HOM05D014920 ORTHO05D009802 9.2e-07 57.8 143 38.5
Gohir.D08G061900 Gossypium hirsutum HOM05D009227 ORTHO05D009956 1.2e-06 57.4 143 35.0
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 1.2e-06 57.4 136 34.6
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 1.2e-06 57.4 134 39.6
Duzib268G0584 Durio zibethinus HOM05D018013 ORTHO05D013371 1.6e-06 57.0 87 44.8
Lalb_Chr10g0099411 Lupinus albus HOM05D018202 ORTHO05D020778 2.0e-06 56.6 82 48.8
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 2.7e-06 56.2 94 40.4
A02p37090 Brassica napus HOM05D009227 ORTHO05D009956 2.7e-06 56.2 72 48.6
BraA02t08695Z Brassica rapa HOM05D009227 ORTHO05D009956 2.7e-06 56.2 72 48.6
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 2.7e-06 56.2 71 45.1
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 2.7e-06 56.2 129 37.2
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 3.5e-06 55.8 69 47.8
Thhalv10005597m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 3.5e-06 55.8 72 45.8
PGSC0003DMG400004059 Solanum tuberosum HOM05D014920 ORTHO05D009802 3.5e-06 55.8 160 36.9
FvH4_5g13090 Fragaria vesca HOM05D021981 ORTHO05D009802 4.5e-06 55.5 121 36.4
FAN18G3782 Fragaria x ananassa HOM05D021981 ORTHO05D009802 4.5e-06 55.5 121 36.4
Lj4g0009196 Lotus japonicus HOM05D008563 ORTHO05D009802 4.5e-06 55.5 157 39.5
VMungo1215G2057 Vigna mungo HOM05D024738 ORTHO05D009802 4.5e-06 55.5 158 38.0
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 5.9e-06 55.1 117 35.0
Solyc06g069340.1 Solanum lycopersicum HOM05D014920 ORTHO05D009802 5.9e-06 55.1 144 38.9
Actinidia01421 Actinidia chinensis HOM05D008563 ORTHO05D009802 7.7e-06 54.7 73 46.6
C02p56090 Brassica napus HOM05D009227 ORTHO05D009956 7.7e-06 54.7 72 47.2
BolC2t11666H Brassica oleracea HOM05D009227 ORTHO05D009956 7.7e-06 54.7 72 47.2
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 7.7e-06 54.7 124 37.1
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 7.7e-06 54.7 134 34.3
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 7.7e-06 54.7 134 34.3
TPR.G2665 Trifolium pratense HOM05D018202 ORTHO05D020778 7.7e-06 54.7 89 43.8


User provided reference genes

Program Settings