Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 5.4e-105 384.4 204 100.0
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 6.6e-79 297.7 207 81.2
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 1.6e-77 293.1 207 76.8
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 2.8e-77 292.4 206 74.8
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 3.6e-77 292.0 208 76.0
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 5.2e-76 288.1 208 75.0
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 2.5e-70 269.2 205 73.7
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 7.6e-67 257.7 211 63.5
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 1.3e-66 256.9 190 79.5
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.2e-66 256.1 211 63.0
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 2.2e-66 256.1 209 67.0
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.9e-66 255.8 211 63.5
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 4.9e-66 255.0 214 61.2
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 1.4e-65 253.4 211 61.6
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.4e-65 252.7 210 62.9
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 5.4e-65 251.5 178 78.1
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 4.6e-64 248.4 205 67.3
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 6.0e-64 248.1 206 65.0
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 1.0e-63 247.3 211 64.9
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 3.0e-63 245.7 215 61.9
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 3.0e-63 245.7 206 63.6
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 3.9e-63 245.4 204 62.3
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 5.1e-63 245.0 205 65.9
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 1.9e-62 243.0 217 58.1
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 2.5e-62 242.7 210 61.9
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 2.5e-62 242.7 208 61.5
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 4.3e-62 241.9 211 62.1
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 4.3e-62 241.9 207 62.8
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 5.6e-62 241.5 208 62.5
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 5.6e-62 241.5 218 56.9
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 9.6e-62 240.7 208 63.5
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.6e-61 240.0 202 60.4
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 1.6e-61 240.0 208 63.0
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 8.1e-61 237.7 213 60.1
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 8.1e-61 237.7 207 61.4
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 1.4e-60 236.9 210 59.5
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 3.1e-60 235.7 205 60.0
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 5.3e-60 235.0 212 57.5
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 9.0e-60 234.2 206 58.7
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 1.2e-59 233.8 207 60.9
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 2.6e-59 232.6 219 60.7
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 3.4e-59 232.3 204 59.8
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 7.6e-59 231.1 199 61.3
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 9.9e-59 230.7 211 55.9
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 1.3e-58 230.3 207 60.9
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 2.9e-58 229.2 207 59.4
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 2.9e-58 229.2 211 61.1
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 8.4e-58 227.6 212 60.8
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 1.1e-57 227.3 217 59.0
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 1.9e-57 226.5 214 56.1
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 3.2e-57 225.7 204 57.8
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 4.2e-57 225.3 213 55.9
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 7.1e-57 224.6 174 74.1
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 7.1e-57 224.6 207 58.0
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 6.0e-56 221.5 222 59.0
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 1.0e-55 220.7 211 55.9
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 3.0e-55 219.2 210 56.2
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 5.1e-55 218.4 215 61.9
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 6.7e-55 218.0 208 57.2
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 1.1e-54 217.2 211 55.0
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 3.3e-54 215.7 199 55.8
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 1.6e-53 213.4 201 57.2
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 4.8e-53 211.8 205 57.6
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 8.1e-53 211.1 203 59.1
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 4.0e-52 208.8 196 57.1
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 1.2e-51 207.2 176 61.9
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 2.6e-51 206.1 219 53.4
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.3e-50 203.8 211 53.1
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 2.2e-50 203.0 244 47.5
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 2.2e-50 203.0 215 53.5
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.9e-50 201.8 175 61.1
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 6.5e-50 201.4 213 52.1
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 8.4e-50 201.1 215 50.7
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 1.9e-49 199.9 174 60.9
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 1.9e-49 199.9 215 52.1
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 2.5e-49 199.5 202 54.5
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.5e-49 199.5 173 60.7
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 3.2e-49 199.1 212 53.8
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 3.2e-49 199.1 185 58.9
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 4.2e-49 198.7 212 53.8
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 4.2e-49 198.7 212 53.8
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 7.1e-49 198.0 185 58.4
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 2.1e-48 196.4 219 54.3
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 2.1e-48 196.4 212 52.8
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 4.6e-48 195.3 212 52.8
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 6.0e-48 194.9 212 53.3
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 1.3e-47 193.7 288 45.8
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 1.8e-47 193.4 216 54.6
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 2.3e-47 193.0 211 53.6
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 3.0e-47 192.6 224 49.1
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 3.0e-47 192.6 176 60.8
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 8.7e-47 191.0 217 52.1
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 9.6e-46 187.6 202 51.0
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 2.1e-45 186.4 214 50.0
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 2.1e-45 186.4 216 52.3
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 2.8e-45 186.0 194 54.1
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 1.4e-44 183.7 211 52.6
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 1.4e-44 183.7 211 52.6
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 1.4e-44 183.7 211 52.6
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 1.4e-44 183.7 170 57.6
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 1.8e-44 183.3 212 52.4
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 2.4e-44 183.0 205 51.7
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 2.0e-43 179.9 190 51.6
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 3.4e-43 179.1 204 52.5
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 4.5e-43 178.7 128 75.8
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.7e-42 176.8 202 51.5
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 3.8e-42 175.6 205 50.2
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 3.2e-41 172.6 239 45.6
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 1.2e-40 170.6 173 53.8
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 2.7e-40 169.5 202 49.5
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 7.9e-40 167.9 203 47.8
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 1.0e-39 167.5 212 45.8
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 7.4e-38 161.4 187 49.7
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 5.3e-36 155.2 131 61.8
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 1.2e-35 154.1 121 69.4
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 3.4e-35 152.5 183 49.2
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 1.0e-34 151.0 121 62.0
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 1.3e-34 150.6 123 66.7
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 3.8e-34 149.1 131 58.0
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 4.2e-33 145.6 198 46.0
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 2.3e-31 139.8 121 61.2
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 1.1e-30 137.5 158 50.6
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 1.7e-29 133.7 151 48.3
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 4.8e-29 132.1 123 57.7
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 3.1e-28 129.4 157 47.8
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 2.1e-24 116.7 107 57.0
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 3.6e-24 115.9 122 53.3
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.8e-21 106.3 98 59.2
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 4.1e-20 102.4 161 37.9
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 3.2e-17 92.8 88 54.5
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 4.4e-14 82.4 145 35.9
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 4.4e-14 82.4 78 57.7
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 9.1e-12 74.7 96 42.7
Medtr5g047050 Medicago truncatula HOM05D001012 ORTHO05D002597 1.2e-11 74.3 150 30.7
TPR.G38561 Trifolium pratense HOM05D001012 ORTHO05D002597 2.7e-11 73.2 150 30.7
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 3.8e-10 69.3 151 30.5
Lj2g0027117 Lotus japonicus HOM05D001012 ORTHO05D002597 3.8e-10 69.3 150 29.3
Psat2g093600 Pisum sativum HOM05D001012 ORTHO05D002597 5.0e-10 68.9 152 29.6
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 2.5e-09 66.6 150 27.3
arahy.Tifrunner.gnm1.ann1.QD4C18 Arachis hypogaea HOM05D001012 ORTHO05D002597 4.2e-09 65.9 150 28.7
arahy.Tifrunner.gnm1.ann1.WE17ZA Arachis hypogaea HOM05D001012 ORTHO05D002597 4.2e-09 65.9 150 28.7
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 5.5e-09 65.5 62 56.5
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 7.2e-09 65.1 68 50.0
Phvul.003G038900 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 1.6e-08 63.9 150 28.7
Sabra10G0108300 Salix brachista HOM05D001012 ORTHO05D002597 1.6e-08 63.9 159 27.0
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 2.7e-08 63.2 153 25.5
Manes.01G025500 Manihot esculenta HOM05D001012 ORTHO05D002597 3.6e-08 62.8 159 27.7
Potri.010G140200 Populus trichocarpa HOM05D001012 ORTHO05D002597 3.6e-08 62.8 159 27.0
Haze_11874 Corylus avellana HOM05D001012 ORTHO05D002597 4.7e-08 62.4 150 26.7
Manes.05G111800 Manihot esculenta HOM05D001012 ORTHO05D002597 4.7e-08 62.4 159 26.4
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 8.0e-08 61.6 47 61.7
VMungo1215G3431 Vigna mungo HOM05D001012 ORTHO05D002597 8.0e-08 61.6 150 27.3
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 1.4e-07 60.8 152 27.0
TWI31G0760 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 1.4e-07 60.8 150 28.0
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 2.3e-07 60.1 154 29.2
Actinidia13401 Actinidia chinensis HOM05D001012 ORTHO05D002597 5.2e-07 58.9 150 26.0
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 5.2e-07 58.9 130 31.5
Actinidia10447 Actinidia chinensis HOM05D001012 ORTHO05D002597 6.8e-07 58.5 152 30.3
CDE10G0510 Ceratophyllum demersum HOM05D001012 ORTHO05D002597 6.8e-07 58.5 152 25.7
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 6.8e-07 58.5 122 33.6
Cfa008854 Carpinus fangiana HOM05D001012 ORTHO05D002597 8.8e-07 58.2 150 26.0
Lalb_Chr13g0302711 Lupinus albus HOM05D001012 ORTHO05D002597 8.8e-07 58.2 147 27.9
MBI09_g45357_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D004721 8.8e-07 58.2 145 26.2
Aqoxy3G00542 Aquilegia oxysepala HOM05D001012 ORTHO05D002597 1.2e-06 57.8 151 25.8
PSO063G0991 Papaver somniferum HOM05D001012 ORTHO05D002597 1.2e-06 57.8 150 23.3
Sabra08G0082700 Salix brachista HOM05D001012 ORTHO05D002597 1.5e-06 57.4 164 28.0
Rhsim09G0124600 Rhododendron simsii HOM05D001012 ORTHO05D002597 2.0e-06 57.0 127 27.6
SMO367G0084 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 2.0e-06 57.0 150 28.7
SEGI_09085 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 2.0e-06 57.0 153 30.1
Peaxi162Scf00175g00919 Petunia axillaris HOM05D001012 ORTHO05D002597 2.6e-06 56.6 122 27.9
SMO139G0062 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 2.6e-06 56.6 144 29.2
Eucgr.G02426 Eucalyptus grandis HOM05D001012 ORTHO05D002597 3.4e-06 56.2 122 27.9
MBI16_g34538_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D002597 3.4e-06 56.2 158 25.3
Hund02547 Selenicereus undatus HOM05D001012 ORTHO05D002597 3.4e-06 56.2 130 29.2
Ciclev10033308m.g Citrus clementina HOM05D001012 ORTHO05D002597 4.4e-06 55.8 151 25.2
Sc04g0004150 Simmondsia chinensis HOM05D001012 ORTHO05D002597 4.4e-06 55.8 154 26.6
TWI81G0138 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 4.4e-06 55.8 121 30.6
DCAR_002900 Daucus carota HOM05D000483 ORTHO05D000158 5.7e-06 55.5 156 28.8
Dinv20144 Davidia involucrata HOM05D001012 ORTHO05D002597 5.7e-06 55.5 150 24.7
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 5.7e-06 55.5 153 24.8
PGR119G0423 Punica granatum HOM05D001012 ORTHO05D002597 5.7e-06 55.5 122 27.9
SEGI_13166 Sequoiadendron giganteum HOM05D001012 ORTHO05D002597 7.5e-06 55.1 153 24.8
CSS0032473 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D002597 9.8e-06 54.7 150 22.7
ECA247G3211 Erigeron canadensis HOM05D001012 ORTHO05D002597 9.8e-06 54.7 157 26.1
HanXRQChr15g0480241 Helianthus annuus HOM05D001012 ORTHO05D002597 9.8e-06 54.7 132 26.5


User provided reference genes

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