Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 3253.0 1661 100.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2865.1 1682 87.3
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2682.5 1704 81.1
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2610.1 1412 91.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2578.1 1679 78.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2530.0 1724 75.2
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2461.4 1768 73.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2388.2 1679 73.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2379.0 1698 72.7
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2379.0 1668 73.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2365.9 1690 72.6
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2355.5 1690 72.8
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2355.1 1702 71.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2346.6 1709 71.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2333.9 1709 71.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2329.3 1699 71.0
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2327.4 1714 70.4
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2326.2 1706 71.1
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2323.1 1707 70.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2321.2 1714 69.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2314.3 1690 71.0
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2306.6 1704 70.4
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2306.6 1711 70.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2306.6 1670 70.8
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2304.6 1703 69.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2300.8 1706 70.6
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2300.0 1711 70.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2295.0 1491 76.1
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2283.1 1290 84.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2283.1 1671 70.2
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2275.4 1691 68.7
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2271.1 1691 69.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2265.0 1702 69.4
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2264.2 1701 69.5
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2262.3 1702 68.2
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2259.6 1681 69.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2258.4 1294 84.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2249.2 1689 68.7
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1694 68.8
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2246.1 1694 68.8
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2243.4 1710 68.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2234.5 1710 67.0
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2233.8 1695 68.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2229.9 1685 68.6
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2226.4 1701 68.1
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2175.2 1662 67.3
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2172.9 1766 66.0
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2168.3 1715 64.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2164.4 1670 67.0
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 1699 66.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2159.8 1743 66.4
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2157.1 1698 65.9
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2157.1 1697 67.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2156.3 1710 64.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2141.3 1684 66.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2139.4 1680 66.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2139.4 1663 66.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1683 66.0
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2135.9 1696 65.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2133.2 1700 64.5
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1687 65.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2131.7 1691 65.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2130.1 1691 65.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2127.8 1691 65.7
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2126.3 1714 64.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2124.4 1665 65.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2124.0 1689 65.9
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2122.4 1687 65.4
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1728 63.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2119.4 1841 62.2
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2114.7 1677 65.3
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1706 64.1
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2098.9 1669 63.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2085.1 1706 64.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2084.3 1671 64.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2081.2 1728 63.3
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2066.2 1715 63.0
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2021.9 1689 62.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2018.8 1710 61.8
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2013.0 1655 63.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1993.4 1686 60.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1993.0 1605 64.6
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1969.9 2111 52.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1927.5 1674 60.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1897.9 1695 59.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1885.9 1708 58.3
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1867.8 1460 66.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1850.5 1688 58.2
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1844.3 1043 85.4
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1842.4 1160 76.3
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1808.1 1664 58.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1787.3 1090 87.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1770.0 1772 55.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1648.6 1702 56.6
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1644.8 1606 53.6
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1638.2 1679 51.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1630.9 1397 61.6
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1622.1 1678 53.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1610.1 1697 51.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1591.6 1654 51.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1464.5 936 73.9
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1449.9 1082 64.1
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1381.3 1107 66.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1308.9 1324 55.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1297.3 1143 63.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1124.4 600 91.7
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1107.4 910 60.4
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.5e-309 1067.0 902 66.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.5e-293 1013.1 740 66.4
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.9e-281 973.0 616 76.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.2e-256 889.8 682 61.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.0e-238 831.6 551 73.1
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.7e-233 814.3 815 57.5
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 2.0e-205 721.1 1568 33.0
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.8e-198 696.0 847 42.0
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 6.8e-182 642.9 571 69.4
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.0e-181 641.3 430 71.6
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.8e-153 548.5 376 71.0
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.9e-152 545.0 329 80.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.2e-139 500.7 900 36.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.3e-116 426.0 697 37.4
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.8e-111 408.3 584 50.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 4.2e-107 394.4 428 45.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 4.7e-106 391.0 240 76.2
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 6.8e-105 387.1 336 63.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 7.5e-104 383.6 246 69.9
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.5e-101 374.8 480 53.3
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.3e-95 356.3 351 67.2
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.8e-85 320.5 213 67.6
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.9e-83 315.8 175 82.3
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.1e-74 283.9 190 74.7
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.2e-70 271.9 183 66.1
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.1e-65 256.9 407 48.2
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.0e-57 228.4 153 69.3
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 9.6e-51 207.2 212 45.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.0e-44 185.7 115 79.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 6.9e-41 174.5 99 85.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-37 163.7 128 56.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 6.0e-37 161.4 128 58.6
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.4e-33 149.4 169 45.6
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-30 140.6 92 77.2
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 9.3e-30 137.5 203 43.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 7.9e-29 134.4 121 52.9
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 7.4e-27 127.9 90 67.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-25 124.0 73 82.2
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.9e-23 115.9 83 66.3
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.0e-23 115.2 63 88.9
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-22 114.0 61 86.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.2e-21 110.5 222 42.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.2e-21 110.5 100 56.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 2.1e-21 109.8 75 76.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 4.6e-21 108.6 204 36.3
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.3e-20 106.3 167 48.5
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 8.2e-18 97.8 57 84.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.7e-15 90.1 141 39.7
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 8.5e-15 87.8 51 74.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 7.2e-14 84.7 76 52.6
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 4.6e-13 82.0 44 77.3
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 4.6e-13 82.0 50 80.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 6.1e-13 81.6 58 63.8
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 3.0e-12 79.3 254 35.8
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.9e-12 79.0 52 73.1
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 8.8e-12 77.8 50 74.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 4.1e-09 68.9 48 72.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 9.1e-09 67.8 94 40.4
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 1.2e-08 67.4 101 49.5
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-08 67.4 78 51.3
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.6e-08 66.2 56 53.6
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.4e-08 65.9 46 71.7
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 4.5e-08 65.5 165 30.3
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 1.0e-07 64.3 159 31.4
Rhsim04G0058800 Rhododendron simsii HOM05D002278 ORTHO05D007219 4.2e-06 58.9 175 29.7
RhsimUnG0197700 Rhododendron simsii HOM05D002278 ORTHO05D007219 4.2e-06 58.9 175 29.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.5e-06 58.5 68 44.1


User provided reference genes

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