Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g046980 Medicago truncatula HOM05D009351 ORTHO05D011822 3.4e-61 238.0 112 100.0
Medtr7g007530 Medicago truncatula HOM05D009351 ORTHO05D011822 4.2e-27 124.8 91 65.9
Medtr1g058030 Medicago truncatula HOM05D009351 ORTHO05D011822 1.8e-22 109.4 91 58.2
Medtr3g465360 Medicago truncatula HOM05D009351 ORTHO05D011822 2.6e-21 105.5 102 52.0
Medtr7g451490 Medicago truncatula HOM05D009351 ORTHO05D011822 2.5e-19 99.0 95 49.5
Medtr5g044650 Medicago truncatula HOM05D009351 ORTHO05D011822 6.1e-18 94.4 77 57.1
Medtr7g071850 Medicago truncatula HOM05D009351 ORTHO05D011822 6.3e-15 84.3 77 50.6
Medtr8g470880 Medicago truncatula HOM05D000003 ORTHO05D000006 4.1e-14 81.6 96 40.6
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 1.6e-13 79.7 104 42.3
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 4.5e-13 78.2 106 40.6
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 1.0e-12 77.0 105 41.0
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 6.5e-12 74.3 86 43.0
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 1.5e-11 73.2 106 39.6
Psat0s1289g0120 Pisum sativum HOM05D009299 ORTHO05D000022 1.5e-11 73.2 101 40.6
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-11 73.2 108 38.0
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-11 73.2 108 38.0
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 1.5e-11 73.2 108 38.0
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 1.5e-11 73.2 108 38.0
Medtr5g078230 Medicago truncatula HOM05D009351 ORTHO05D011822 2.5e-11 72.4 89 43.8
Medtr2g041060 Medicago truncatula HOM05D009299 ORTHO05D000022 9.4e-11 70.5 87 39.1
TPR.G35736 Trifolium pratense HOM05D009299 ORTHO05D000022 9.4e-11 70.5 86 40.7
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 1.2e-10 70.1 81 42.0
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 1.6e-10 69.7 100 40.0
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 2.3e-09 65.9 101 32.7
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 5.2e-09 64.7 86 36.0
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 5.2e-09 64.7 65 44.6
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 8.8e-09 63.9 71 45.1
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 8.8e-09 63.9 65 47.7
TPR.G34502 Trifolium pratense HOM05D029382 ORTHO05D022921 8.8e-09 63.9 105 36.2
Psat0s2945g0120 Pisum sativum HOM05D009299 ORTHO05D000022 2.0e-08 62.8 89 36.0
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 2.0e-08 62.8 65 43.1
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 2.0e-08 62.8 86 34.9
Glyma.15G087900 Glycine max HOM05D000062 ORTHO05D000043 9.8e-08 60.5 88 38.6
AUR62034864 Chenopodium quinoa HOM05D000295 ORTHO05D000022 1.3e-07 60.1 74 39.2
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 2.2e-07 59.3 94 35.1
TPR.G24766 Trifolium pratense HOM05D000096 ORTHO05D000045 2.2e-07 59.3 46 63.0
RcHm_v2.0_Chr3g0455401 Rosa chinensis HOM05D000003 ORTHO05D000004 4.8e-07 58.2 70 44.3
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 8.3e-07 57.4 88 37.5
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 1.1e-06 57.0 94 35.1
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 1.1e-06 57.0 88 36.4
Medtr4g051040 Medicago truncatula HOM05D009351 ORTHO05D011822 1.1e-06 57.0 35 77.1
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.4e-06 56.6 86 34.9
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 1.4e-06 56.6 70 44.3
TPR.G17328 Trifolium pratense HOM05D000014 ORTHO05D000016 1.8e-06 56.2 66 42.4
VMungo0540G1625 Vigna mungo HOM05D000062 ORTHO05D000043 1.8e-06 56.2 88 37.5
MD02G1021900 Malus domestica HOM05D000003 ORTHO05D037873 2.4e-06 55.8 85 37.6
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 3.1e-06 55.5 82 41.5
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 4.1e-06 55.1 84 34.5
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 5.4e-06 54.7 71 36.6
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 7.0e-06 54.3 60 41.7
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-06 53.9 104 30.8
Medtr1g062850 Medicago truncatula HOM05D025657 ORTHO05D030193 9.1e-06 53.9 55 47.3


User provided reference genes

Program Settings