Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.3e-51 205.3 104 100.0
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 9.9e-47 189.9 104 89.4
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 2.1e-44 182.2 104 84.6
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.0e-43 179.9 104 84.6
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 8.7e-43 176.8 102 84.3
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 1.1e-42 176.4 104 81.7
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 9.6e-42 173.3 104 78.8
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 4.8e-41 171.0 104 81.7
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 1.3e-38 162.9 104 75.0
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 2.2e-38 162.2 99 77.8
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 8.4e-38 160.2 104 75.0
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 2.4e-37 158.7 104 73.1
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 4.2e-37 157.9 104 74.0
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 5.4e-37 157.5 104 74.0
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.2e-36 156.4 104 70.2
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 1.6e-36 156.0 105 71.4
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 2.1e-36 155.6 103 73.8
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 3.5e-36 154.8 104 70.2
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 3.5e-36 154.8 105 72.4
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 3.5e-36 154.8 104 70.2
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 4.6e-36 154.5 103 73.8
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 7.9e-36 153.7 104 73.1
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 7.9e-36 153.7 102 71.6
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 1.0e-35 153.3 102 70.6
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 1.0e-35 153.3 104 66.3
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 1.3e-35 152.9 104 69.2
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 1.8e-35 152.5 105 71.4
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 1.8e-35 152.5 104 70.2
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 1.8e-35 152.5 104 70.2
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 1.8e-35 152.5 104 70.2
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 3.0e-35 151.8 99 73.7
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 3.9e-35 151.4 101 71.3
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 5.1e-35 151.0 104 69.2
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 5.1e-35 151.0 105 71.4
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.7e-35 150.6 100 72.0
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 8.7e-35 150.2 100 70.0
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.5e-34 149.4 104 70.2
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 1.9e-34 149.1 102 68.6
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 1.9e-34 149.1 104 68.3
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 2.5e-34 148.7 102 68.6
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 2.5e-34 148.7 104 66.3
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 2.5e-34 148.7 104 66.3
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 4.3e-34 147.9 102 68.6
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 5.6e-34 147.5 99 72.7
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 5.6e-34 147.5 102 67.6
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 5.6e-34 147.5 103 70.9
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 9.6e-34 146.7 102 67.6
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 1.3e-33 146.4 104 68.3
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 1.6e-33 146.0 100 68.0
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.6e-33 146.0 104 66.3
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 2.1e-33 145.6 100 70.0
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 2.8e-33 145.2 102 66.7
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 8.1e-33 143.7 104 70.2
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 1.1e-32 143.3 100 66.0
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 1.1e-32 143.3 100 68.0
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 1.8e-32 142.5 100 70.0
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 5.3e-32 141.0 103 66.0
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 6.9e-32 140.6 103 67.0
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 2.6e-31 138.7 104 66.3
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 3.4e-31 138.3 95 70.5
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.0e-30 136.7 94 72.3
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 1.7e-30 136.0 97 67.0
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 1.7e-30 136.0 102 67.6
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 3.8e-30 134.8 95 67.4
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 3.8e-30 134.8 102 65.7
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 1.1e-29 133.3 95 68.4
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 1.4e-29 132.9 105 63.8
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 1.4e-29 132.9 102 64.7
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 3.5e-28 128.3 89 67.4
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 6.0e-28 127.5 100 59.0
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 7.9e-28 127.1 89 68.5
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 3.0e-27 125.2 92 65.2
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 5.1e-27 124.4 90 65.6
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 5.1e-27 124.4 92 64.1
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 6.7e-27 124.0 92 64.1
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 8.7e-27 123.6 92 63.0
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 1.5e-26 122.9 99 56.6
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 1.5e-26 122.9 92 63.0
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 4.3e-26 121.3 76 77.6
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 1.6e-25 119.4 90 62.2
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 1.6e-25 119.4 90 62.2
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.6e-25 119.4 90 63.3
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 2.8e-25 118.6 91 68.1
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 3.7e-25 118.2 74 78.4
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 4.8e-25 117.9 92 60.9
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 1.4e-24 116.3 90 61.1
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 1.8e-24 115.9 92 59.8
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 3.1e-24 115.2 92 58.7
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 5.3e-24 114.4 90 60.0
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 6.9e-24 114.0 92 58.7
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 6.9e-24 114.0 90 58.9
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 1.5e-23 112.8 76 72.4
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 2.2e-22 109.0 76 71.1
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 2.9e-22 108.6 76 69.7
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 1.1e-21 106.7 74 70.3
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 3.2e-21 105.1 74 70.3
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 2.7e-20 102.1 76 64.5
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 4.6e-20 101.3 74 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.3e-19 99.8 93 59.1
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 1.3e-19 99.8 79 63.3
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 1.8e-19 99.4 90 56.7
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 5.1e-19 97.8 100 46.0
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 1.5e-18 96.3 101 47.5
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 2.5e-18 95.5 92 54.3
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 2.4e-16 89.0 68 61.8
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 5.3e-16 87.8 85 51.8
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 2.6e-15 85.5 91 48.4
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 7.7e-15 84.0 73 56.2
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 3.8e-14 81.6 64 64.1
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 3.2e-13 78.6 87 46.0
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 1.2e-12 76.6 88 47.7
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 2.1e-12 75.9 62 66.1
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 2.7e-12 75.5 97 47.4
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 7.9e-12 73.9 86 48.8
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 2.3e-11 72.4 52 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 8.8e-11 70.5 86 41.9
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 2.8e-09 65.5 75 46.7
arahy.Tifrunner.gnm1.ann1.1NQ5QU Arachis hypogaea HOM05D055138 ORTHO05D008583 1.7e-06 56.2 28 85.7


User provided reference genes

Program Settings