Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g045660 Medicago truncatula HOM05D000055 ORTHO05D264401 1.1e-25 119.0 55 100.0
TPR.G25758 Trifolium pratense HOM05D000055 ORTHO05D000057 5.1e-10 67.0 49 65.3
Ca_07569_v3 Cicer arietinum L. HOM05D000055 ORTHO05D000057 1.1e-09 65.9 49 59.2
Phvul.008G248900 Phaseolus vulgaris HOM05D000055 ORTHO05D000057 1.1e-09 65.9 49 65.3
Medtr5g075060 Medicago truncatula HOM05D000055 ORTHO05D000057 2.5e-09 64.7 49 65.3
VMungo0647G1033 Vigna mungo HOM05D000055 ORTHO05D000057 5.7e-09 63.5 49 63.3
MSTRG.21248 Avicennia marina HOM05D000055 ORTHO05D000057 7.4e-09 63.2 49 61.2
Glyma.02G234800 Glycine max HOM05D000055 ORTHO05D000057 9.7e-09 62.8 49 61.2
CSS0005650 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 1.3e-08 62.4 45 64.4
Manes.18G137500 Manihot esculenta HOM05D000055 ORTHO05D000057 1.6e-08 62.0 49 61.2
Ciclev10001000m.g Citrus clementina HOM05D000055 ORTHO05D000057 2.8e-08 61.2 46 60.9
Actinidia23179 Actinidia chinensis HOM05D000055 ORTHO05D000057 4.8e-08 60.5 49 57.1
Nitab4.5_0002279g0100 Nicotiana tabacum HOM05D000055 ORTHO05D000057 4.8e-08 60.5 49 57.1
TPR.G25762 Trifolium pratense HOM05D000055 ORTHO05D000057 4.8e-08 60.5 49 59.2
TWI79G0838 Tripterygium wilfordii HOM05D000055 ORTHO05D000057 4.8e-08 60.5 49 57.1
Nitab4.5_0000375g0160 Nicotiana tabacum HOM05D000055 ORTHO05D000057 8.2e-08 59.7 49 55.1
Peaxi162Scf00464g00004 Petunia axillaris HOM05D000055 ORTHO05D000057 8.2e-08 59.7 49 55.1
Nitab4.5_0000263g0280 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.1e-07 59.3 49 55.1
Nitab4.5_0002713g0060 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.1e-07 59.3 49 55.1
Potri.019G127500 Populus trichocarpa HOM05D000055 ORTHO05D000057 1.1e-07 59.3 49 59.2
TAR623G0645 Trochodendron aralioides HOM05D000055 ORTHO05D000057 1.1e-07 59.3 49 55.1
Carub.0008s0214 Capsella rubella HOM05D000055 ORTHO05D000057 1.4e-07 58.9 46 58.7
ATR0681G098 Amborella trichopoda HOM05D000055 ORTHO05D000057 1.8e-07 58.5 45 62.2
Hund05049 Selenicereus undatus HOM05D000055 ORTHO05D000057 1.8e-07 58.5 49 57.1
Dinv28715 Davidia involucrata HOM05D000055 ORTHO05D000057 2.4e-07 58.2 49 55.1
Nn2g10358 Nelumbo nucifera HOM05D000055 ORTHO05D000057 2.4e-07 58.2 49 57.1
TAR633G1552 Trochodendron aralioides HOM05D000055 ORTHO05D000057 2.4e-07 58.2 49 55.1
AL8G12760 Arabidopsis lyrata HOM05D000055 ORTHO05D000057 3.1e-07 57.8 46 56.5
BcaC06g32519 Brassica carinata HOM05D000055 ORTHO05D000057 3.1e-07 57.8 49 55.1
BolC9t59664H Brassica oleracea HOM05D000055 ORTHO05D000057 3.1e-07 57.8 49 55.1
Hma1.2p1_2270F.1_g318520 Hydrangea macrophylla HOM05D000055 ORTHO05D000057 3.1e-07 57.8 49 55.1
MD11G1061700 Malus domestica HOM05D000055 ORTHO05D000057 3.1e-07 57.8 45 57.8
RcHm_v2.0_Chr5g0072431 Rosa chinensis HOM05D000055 ORTHO05D000057 3.1e-07 57.8 49 55.1
Sp2g10740 Schrenkiella parvula HOM05D000055 ORTHO05D000057 3.1e-07 57.8 46 56.5
PGSC0003DMG400011641 Solanum tuberosum HOM05D000055 ORTHO05D000057 3.1e-07 57.8 49 57.1
C09p69200 Brassica napus HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 55.1
CSS0043530 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 55.1
CSS0048484 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 55.1
FvH4_3g40220 Fragaria vesca HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 53.1
FAN11G1092 Fragaria x ananassa HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 53.1
FAN25G2423 Fragaria x ananassa HOM05D000055 ORTHO05D000057 4.1e-07 57.4 49 53.1
Lalb_Chr18g0054351 Lupinus albus HOM05D000055 ORTHO05D000057 4.1e-07 57.4 46 56.5
VMungo1127G1367 Vigna mungo HOM05D000055 ORTHO05D000057 4.1e-07 57.4 44 61.4
CiPaw.13G065800 Carya illinoinensis HOM05D000055 ORTHO05D000057 5.3e-07 57.0 45 55.6
Haze_24446 Corylus avellana HOM05D000055 ORTHO05D000057 5.3e-07 57.0 49 55.1
Dinv25317 Davidia involucrata HOM05D000055 ORTHO05D000057 5.3e-07 57.0 49 55.1
Glyma.18G021600 Glycine max HOM05D000055 ORTHO05D000057 5.3e-07 57.0 49 53.1
Sopen06g015800 Solanum pennellii HOM05D000055 ORTHO05D000057 5.3e-07 57.0 49 53.1
Eucgr.E02758 Eucalyptus grandis HOM05D000055 ORTHO05D000057 6.9e-07 56.6 43 60.5
Thhalv10000893m.g Eutrema salsugineum HOM05D000055 ORTHO05D000057 6.9e-07 56.6 46 54.3
Solyc05g052270.3 Solanum lycopersicum HOM05D000055 ORTHO05D000057 6.9e-07 56.6 49 55.1
Sopen05g030820 Solanum pennellii HOM05D000055 ORTHO05D000057 6.9e-07 56.6 49 55.1
Sopen06g015760 Solanum pennellii HOM05D000055 ORTHO05D000057 6.9e-07 56.6 46 54.3
AT5G45820 Arabidopsis thaliana HOM05D000055 ORTHO05D000057 9.0e-07 56.2 46 54.3
CSS0011783 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 9.0e-07 56.2 45 55.6
CSS0015556 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 9.0e-07 56.2 45 55.6
Cc01_g15130 Coffea canephora HOM05D000055 ORTHO05D000057 9.0e-07 56.2 44 59.1
LjContig00141g0001354 Lotus japonicus HOM05D000055 ORTHO05D000057 9.0e-07 56.2 49 57.1
Peaxi162Scf00167g00138 Petunia axillaris HOM05D000055 ORTHO05D000057 9.0e-07 56.2 49 55.1
HPP92_013827 Vanilla planifolia HOM05D000055 ORTHO05D000057 9.0e-07 56.2 45 57.8
HPP92_013873 Vanilla planifolia HOM05D000055 ORTHO05D000057 9.0e-07 56.2 45 57.8
BraA02t04903Z Brassica rapa HOM05D000055 ORTHO05D000057 1.2e-06 55.8 49 51.0
Lj6g0010838 Lotus japonicus HOM05D000055 ORTHO05D000057 1.2e-06 55.8 46 54.3
Nitab4.5_0000002g0120 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.2e-06 55.8 49 53.1
Peaxi162Scf00732g00048 Petunia axillaris HOM05D000055 ORTHO05D000057 1.2e-06 55.8 49 53.1
QL01p025234 Quercus lobata HOM05D000055 ORTHO05D000057 1.2e-06 55.8 49 53.1
Solyc06g050280.1 Solanum lycopersicum HOM05D000055 ORTHO05D000057 1.2e-06 55.8 46 54.3
PGSC0003DMG400029075 Solanum tuberosum HOM05D000055 ORTHO05D000057 1.2e-06 55.8 49 51.0
GSVIVG01024587001 Vitis vinifera HOM05D000055 ORTHO05D000057 1.2e-06 55.8 44 61.4
Aa31LG11G180 Aethionema arabicum HOM05D000055 ORTHO05D000057 1.5e-06 55.5 49 53.1
BcaB07g30430 Brassica carinata HOM05D000055 ORTHO05D000057 1.5e-06 55.5 46 54.3
CARHR176150 Cardamine hirsuta HOM05D000055 ORTHO05D000057 1.5e-06 55.5 46 54.3
FAN16G1861 Fragaria x ananassa HOM05D000055 ORTHO05D000057 1.5e-06 55.5 49 51.0
Lsat_1_v5_gn_4_48881 Lactuca sativa HOM05D000055 ORTHO05D000057 1.5e-06 55.5 45 55.6
PGR119G0458 Punica granatum HOM05D000055 ORTHO05D000057 1.5e-06 55.5 49 51.0
Solyc06g050290.1 Solanum lycopersicum HOM05D000055 ORTHO05D000057 1.5e-06 55.5 46 54.3
Solyc06g050300.3 Solanum lycopersicum HOM05D000055 ORTHO05D000057 1.5e-06 55.5 49 51.0
GSVIVG01032708001 Vitis vinifera HOM05D000055 ORTHO05D000057 1.5e-06 55.5 43 58.1
MSTRG.17907 Avicennia marina HOM05D000055 ORTHO05D000057 2.0e-06 55.1 49 53.1
Glyma.11G235300 Glycine max HOM05D000055 ORTHO05D000057 2.0e-06 55.1 49 51.0
Oeu064874.1 Olea europaea HOM05D000055 ORTHO05D000057 2.0e-06 55.1 49 55.1
Prupe.6G043700 Prunus persica HOM05D000055 ORTHO05D000057 2.0e-06 55.1 49 53.1
Sc12g0000160 Simmondsia chinensis HOM05D000055 ORTHO05D000057 2.0e-06 55.1 49 53.1
Atru.chr1.2539 Acer truncatum HOM05D000055 ORTHO05D000057 2.6e-06 54.7 49 51.0
Aqoxy4G02354 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 2.6e-06 54.7 49 53.1
BraA06t27496Z Brassica rapa HOM05D000055 ORTHO05D000057 2.6e-06 54.7 40 60.0
CSS0045638 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 2.6e-06 54.7 45 53.3
CAN.G469.3 Capsicum annuum HOM05D000055 ORTHO05D115210 2.6e-06 54.7 49 51.0
ECA247G2118 Erigeron canadensis HOM05D000055 ORTHO05D000057 2.6e-06 54.7 49 53.1
Thhalv10013486m.g Eutrema salsugineum HOM05D000055 ORTHO05D000057 2.6e-06 54.7 49 51.0
Lsat_1_v5_gn_9_14241 Lactuca sativa HOM05D000055 ORTHO05D000057 2.6e-06 54.7 45 53.3
TAR369G0499 Trochodendron aralioides HOM05D000055 ORTHO05D000057 2.6e-06 54.7 49 53.1
BcaB05g21634 Brassica carinata HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 49.0
BcaC03g13175 Brassica carinata HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 49.0
C02p02980 Brassica napus HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 49.0
BolC2t06259H Brassica oleracea HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 49.0
Dinv11388 Davidia involucrata HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 53.1
Nn5g26909 Nelumbo nucifera HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 51.0
Potri.013G156000 Populus trichocarpa HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 53.1
QL05p047814 Quercus lobata HOM05D000055 ORTHO05D000057 3.4e-06 54.3 46 54.3
Solyc06g050270.1 Solanum lycopersicum HOM05D000055 ORTHO05D000057 3.4e-06 54.3 46 52.2
THA.LOC104799382 Tarenaya hassleriana HOM05D000055 ORTHO05D000057 3.4e-06 54.3 49 53.1
Aqoxy1G02024 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 49.0
BcaC03g13177 Brassica carinata HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 49.0
A10p28860 Brassica napus HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 53.1
BraA10t44933Z Brassica rapa HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 53.1
Ciclev10015231m.g Citrus clementina HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 46.9
Glyma.02G235100 Glycine max HOM05D000055 ORTHO05D000057 4.5e-06 53.9 43 53.5
Lj1P122T42 Lonicera japonica HOM05D000055 ORTHO05D000057 4.5e-06 53.9 45 53.3
Lalb_Chr04g0251811 Lupinus albus HOM05D000055 ORTHO05D000057 4.5e-06 53.9 42 59.5
Manes.07G137800 Manihot esculenta HOM05D000055 ORTHO05D000057 4.5e-06 53.9 42 57.1
Nitab4.5_0002348g0030 Nicotiana tabacum HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 51.0
Oeu011366.1 Olea europaea HOM05D000055 ORTHO05D000057 4.5e-06 53.9 49 51.0
Potri.016G133500 Populus trichocarpa HOM05D000055 ORTHO05D000057 4.5e-06 53.9 45 57.8
Sabra04G0151100 Salix brachista HOM05D000055 ORTHO05D000057 4.5e-06 53.9 45 57.8
Sc05g0007050 Simmondsia chinensis HOM05D000055 ORTHO05D000057 4.5e-06 53.9 45 53.3
vmacro09976 Vaccinium macrocarpon HOM05D000055 ORTHO05D000057 4.5e-06 53.9 45 53.3
BcaC03g16788 Brassica carinata HOM05D000055 ORTHO05D000057 5.9e-06 53.5 46 52.2
A02p29360 Brassica napus HOM05D000055 ORTHO05D000057 5.9e-06 53.5 46 52.2
C02p46620 Brassica napus HOM05D000055 ORTHO05D000057 5.9e-06 53.5 46 52.2
BolC2t10716H Brassica oleracea HOM05D000055 ORTHO05D000057 5.9e-06 53.5 46 52.2
BraA02t07965Z Brassica rapa HOM05D000055 ORTHO05D000057 5.9e-06 53.5 46 52.2
Gohir.D03G144800 Gossypium hirsutum HOM05D000055 ORTHO05D000057 5.9e-06 53.5 49 51.0
Gorai.003G152000 Gossypium raimondii HOM05D000055 ORTHO05D000057 5.9e-06 53.5 49 51.0
Prupe.4G062900 Prunus persica HOM05D000055 ORTHO05D000057 5.9e-06 53.5 49 55.1
PGSC0003DMG400029077 Solanum tuberosum HOM05D000055 ORTHO05D000057 5.9e-06 53.5 49 49.0
Dinv12264 Davidia involucrata HOM05D000055 ORTHO05D000057 7.7e-06 53.1 49 51.0
MBI07_g09556_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D000057 7.7e-06 53.1 42 54.8
MD03G1059600 Malus domestica HOM05D000055 ORTHO05D000057 7.7e-06 53.1 43 58.1
Nitab4.5_0001234g0050 Nicotiana tabacum HOM05D000055 ORTHO05D000057 7.7e-06 53.1 45 53.3
Actinidia00991 Actinidia chinensis HOM05D000055 ORTHO05D000057 1.0e-05 52.8 45 53.3
AT5G07070 Arabidopsis thaliana HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 51.0
arahy.Tifrunner.gnm1.ann1.9NB62H Arachis hypogaea HOM05D000055 ORTHO05D000057 1.0e-05 52.8 46 43.5
arahy.Tifrunner.gnm1.ann1.YEIN47 Arachis hypogaea HOM05D000055 ORTHO05D000057 1.0e-05 52.8 46 43.5
A10p28870 Brassica napus HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 51.0
BraA10t44934Z Brassica rapa HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 51.0
Carub.0006s0599 Capsella rubella HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 51.0
CARHR272220 Cardamine hirsuta HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 51.0
AUR62003433 Chenopodium quinoa HOM05D000055 ORTHO05D000057 1.0e-05 52.8 46 47.8
AUR62012355 Chenopodium quinoa HOM05D000055 ORTHO05D000057 1.0e-05 52.8 46 47.8
Nitab4.5_0001060g0050 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 53.1
Nitab4.5_0004880g0030 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 53.1
Oeu064873.1 Olea europaea HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 53.1
SHI19260 Sapria himalayana HOM05D000055 ORTHO05D000057 1.0e-05 52.8 49 49.0
Solyc09g042660.4 Solanum lycopersicum HOM05D000055 ORTHO05D000057 1.0e-05 52.8 46 52.2


User provided reference genes

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