Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.8e-37 158.7 75 100.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 8.2e-35 149.8 75 92.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.6e-33 144.8 75 93.3
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.0e-32 142.9 76 92.1
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 1.9e-31 138.7 75 86.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.2e-30 136.0 75 89.3
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.7e-30 134.8 75 89.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 7.4e-28 126.7 74 83.8
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 2.8e-27 124.8 73 79.5
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 4.8e-27 124.0 74 82.4
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.4e-26 122.5 76 81.6
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-26 122.5 77 83.1
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.4e-26 122.5 73 80.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 4.1e-26 120.9 81 74.1
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 7.0e-26 120.2 74 79.7
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.5e-25 119.0 76 77.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.6e-25 118.2 73 80.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.6e-25 118.2 75 74.7
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 3.5e-25 117.9 75 80.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 3.5e-25 117.9 75 73.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 3.5e-25 117.9 75 81.3
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 4.5e-25 117.5 75 78.7
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.0e-24 116.3 73 80.8
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 3.8e-24 114.4 80 71.2
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 3.8e-24 114.4 77 75.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 6.5e-24 113.6 83 72.3
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 8.5e-24 113.2 71 80.3
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 8.5e-24 113.2 71 80.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.5e-23 111.7 77 76.6
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.2e-23 111.3 74 73.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.2e-23 110.9 71 78.9
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 4.2e-23 110.9 76 71.1
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 5.5e-23 110.5 73 72.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 5.5e-23 110.5 74 71.6
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 7.2e-23 110.2 78 75.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 9.4e-23 109.8 75 69.3
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-22 109.0 72 72.2
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.6e-22 109.0 74 71.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 2.7e-22 108.2 71 77.5
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 3.6e-22 107.8 75 74.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 4.7e-22 107.5 68 75.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 8.0e-22 106.7 73 75.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.0e-21 106.3 74 66.2
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.0e-21 106.3 73 74.0
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.0e-21 106.3 79 72.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.8e-21 105.5 78 73.1
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.3e-21 105.1 73 69.9
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.5e-20 102.4 73 68.5
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 2.6e-20 101.7 85 65.9
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.4e-20 100.9 70 67.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.4e-20 100.9 74 68.9
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.4e-20 100.9 74 68.9
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.4e-20 100.9 74 68.9
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.4e-20 100.9 73 69.9
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 9.7e-20 99.8 76 68.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.3e-19 99.4 74 67.6
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.7e-19 99.0 70 67.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-19 99.0 70 71.4
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.8e-19 98.2 87 63.2
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.8e-19 98.2 81 63.0
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 3.7e-19 97.8 84 61.9
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.7e-19 97.8 81 63.0
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 4.8e-19 97.4 71 69.0
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 4.8e-19 97.4 72 72.2
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.1e-18 94.7 72 62.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 5.3e-18 94.0 66 69.7
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 7.0e-18 93.6 71 64.8
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 64.4
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 60.3
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.6e-17 92.4 83 56.6
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.0e-16 89.7 73 63.0
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.2e-16 88.6 55 76.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.2e-16 88.6 66 65.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.9e-16 88.2 71 64.8
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.9e-16 88.2 71 64.8
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.8e-16 87.8 70 65.7
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 6.5e-16 87.0 81 63.0
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 6.5e-16 87.0 71 63.4
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 6.5e-16 87.0 71 63.4
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 70 67.1
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.5e-15 85.9 76 59.2
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.9e-15 85.5 72 61.1
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-15 85.5 84 60.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.9e-15 85.5 84 60.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.9e-15 85.5 78 61.5
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.9e-15 85.5 69 60.9
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.2e-15 84.7 72 61.1
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.2e-15 84.3 70 61.4
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-15 84.3 84 59.5
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-15 84.3 84 59.5
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 4.2e-15 84.3 81 58.0
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.2e-15 84.3 66 62.1
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.5e-15 84.0 70 62.9
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 5.5e-15 84.0 67 65.7
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 7.2e-15 83.6 72 59.7
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.4e-15 83.2 76 60.5
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 9.4e-15 83.2 72 59.7
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 9.4e-15 83.2 63 63.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-14 82.8 72 61.1
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-14 82.8 84 58.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-14 82.8 72 61.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-14 82.8 72 61.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-14 82.8 72 61.1
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.2e-14 82.8 71 57.7
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 58.3
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 58.3
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 58.3
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.6e-14 82.4 74 60.8
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.6e-14 82.4 82 58.5
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 61.1
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 75 58.7
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 82 58.5
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 82 58.5
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 3.6e-14 81.3 82 58.5
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.6e-14 81.3 82 58.5
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 3.6e-14 81.3 82 58.5
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 3.6e-14 81.3 73 54.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 4.7e-14 80.9 75 56.0
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 4.7e-14 80.9 72 58.3
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.7e-14 80.9 82 57.3
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.1e-14 80.5 79 57.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.0e-14 80.1 76 59.2
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-13 79.3 83 54.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-13 79.3 83 54.2
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 56.9
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-13 79.0 82 54.9
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.0e-13 77.8 83 55.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 8.8e-13 76.6 65 58.5
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 4.4e-12 74.3 65 58.5
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 7.5e-12 73.6 61 60.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.5e-12 73.6 78 52.6
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 9.7e-12 73.2 78 53.8
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 9.7e-12 73.2 64 57.8
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.7e-11 72.4 62 61.3
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.2e-11 72.0 66 62.1
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-11 71.6 80 46.2
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 3.7e-11 71.2 82 51.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.4e-10 69.3 93 44.1
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.1e-10 68.2 65 60.0
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 9.1e-10 66.6 88 44.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.0e-09 65.5 74 41.9
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.5e-09 64.7 85 42.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 5.9e-09 63.9 76 44.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 1.9e-07 58.9 75 45.3
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 5.5e-07 57.4 54 61.1


User provided reference genes

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