Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1531.2 759 100.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1384.4 760 91.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1305.8 768 85.9
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1273.1 760 83.3
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1264.2 759 82.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1258.4 760 82.2
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1257.3 759 82.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1251.1 759 81.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1241.9 760 80.8
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1238.8 760 81.4
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1134.4 667 85.3
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1104.0 762 73.1
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1096.3 758 72.0
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 762 72.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1090.9 761 71.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1090.9 767 72.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 761 71.4
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 762 71.9
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1077.8 762 71.7
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 760 71.1
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1075.8 761 70.3
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 5.2e-312 1074.3 761 70.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.2e-312 1073.9 762 71.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 5.2e-312 1073.5 767 70.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 3.6e-311 1071.2 761 70.3
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.7e-311 1070.8 761 72.4
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.5e-309 1065.1 761 70.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 760 69.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.8e-308 1060.8 783 68.3
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.4e-307 1058.5 782 68.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.9e-307 1057.0 762 71.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 5.9e-306 1053.9 760 72.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.8e-305 1051.2 785 67.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.9e-304 1048.9 760 72.5
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 761 69.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-304 1047.7 776 68.8
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 762 70.1
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.0e-302 1043.1 763 69.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.4e-302 1042.7 784 67.9
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 784 67.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.2e-300 1035.4 785 67.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.8e-300 1034.2 762 69.7
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.2e-300 1033.5 760 69.3
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.1e-299 1031.6 760 68.8
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.3e-299 1030.8 794 67.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 6.5e-297 1023.8 782 67.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 761 69.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.3e-294 1015.4 805 65.2
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 3.9e-294 1014.6 793 66.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 779 66.9
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 4.4e-293 1011.1 774 64.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 7.4e-293 1010.4 780 66.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 7.4e-293 1010.4 774 64.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 775 64.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 777 65.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 779 65.1
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 7.0e-291 1003.8 777 66.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 784 65.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 776 64.6
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.2e-289 998.8 781 65.4
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 1.1e-288 996.5 778 66.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-288 996.5 729 70.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 4.2e-288 994.6 780 64.5
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.2e-287 993.0 781 65.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 3.6e-287 991.5 762 66.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.0e-286 989.9 762 66.9
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.8e-286 989.2 782 65.0
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.3e-285 984.9 774 64.2
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 5.7e-285 984.2 780 64.6
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.2e-284 982.2 757 66.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 5.3e-283 977.6 781 64.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 3.6e-279 964.9 780 63.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.7e-279 964.5 760 65.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.1e-279 964.1 780 63.3
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 2.3e-278 962.2 780 63.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.3e-278 962.2 780 63.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.0e-278 961.8 761 64.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 4.0e-278 961.4 778 63.4
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.5e-277 959.5 760 64.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.0e-277 959.1 759 65.0
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.4e-277 958.4 773 63.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 7.5e-277 957.2 760 63.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.3e-276 956.4 780 62.9
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.7e-276 956.1 785 62.0
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 4.8e-276 954.5 785 62.0
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.4e-275 953.0 759 63.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.8e-275 952.6 719 66.8
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.2e-274 949.9 774 63.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.0e-273 946.8 759 64.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.8e-273 944.9 778 62.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.5e-272 943.0 774 61.8
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 4.2e-272 941.4 763 63.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.1e-271 939.1 761 62.9
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.6e-271 938.3 785 60.6
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 6.1e-271 937.6 762 63.1
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.8e-270 936.0 785 61.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.2e-270 934.5 780 61.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.5e-269 930.6 785 60.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 9.8e-269 930.2 771 62.5
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 3.7e-268 928.3 782 61.1
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.4e-267 925.6 761 63.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.1e-267 925.2 773 61.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.4e-267 924.5 802 60.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-266 922.5 771 61.7
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.7e-266 922.2 765 62.4
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.5e-266 921.4 779 61.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 4.5e-266 921.4 842 59.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.3e-265 919.1 783 60.2
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.9e-265 918.7 781 59.7
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.8e-265 918.3 782 59.8
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.0e-265 917.9 780 60.5
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 5.6e-264 914.4 780 60.6
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.5e-264 913.7 775 60.9
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-263 913.3 782 60.2
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.6e-263 912.9 799 60.6
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.1e-263 912.5 771 61.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 3.6e-263 911.8 824 57.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 2.6e-261 905.6 782 60.4
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.7e-260 901.7 777 60.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.6e-257 891.0 771 59.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.3e-256 888.3 777 60.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.7e-255 884.8 784 59.6
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.4e-253 878.6 783 58.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.1e-248 863.6 750 60.5
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.5e-248 863.2 771 58.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.3e-248 861.7 755 58.3
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.2e-247 860.1 773 58.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.2e-247 860.1 707 62.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.6e-247 858.6 784 57.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.7e-244 848.6 769 58.9
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.9e-244 848.2 772 58.0
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 7.6e-237 824.3 725 61.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.9e-232 809.7 760 56.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 6.9e-230 801.2 773 55.9
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.5e-229 800.0 780 54.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 4.4e-229 798.5 774 55.2
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.3e-228 797.0 685 61.5
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.1e-203 714.1 742 52.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.5e-180 634.8 733 46.0
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.6e-178 630.6 769 45.8
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 9.4e-171 604.7 738 45.1
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 8.0e-170 601.7 760 46.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 8.0e-170 601.7 423 69.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.3e-169 600.1 737 45.7
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.8e-166 590.5 725 44.4
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 7.7e-157 558.5 425 68.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.1e-155 554.7 734 42.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.1e-145 520.0 387 64.6
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 5.2e-145 519.2 387 64.6
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.9e-143 513.5 394 64.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 4.0e-137 493.0 276 81.9
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 9.5e-131 471.9 549 47.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.4e-118 430.6 421 55.3
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.6e-115 418.7 253 77.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-108 396.4 463 47.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.8e-97 361.3 747 34.8
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.9e-71 274.2 286 53.8
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.8e-66 257.7 773 28.2
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 6.5e-55 219.9 242 48.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 6.5e-47 193.4 208 50.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.4e-41 174.9 142 63.4
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-38 165.6 82 84.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.7e-32 144.8 149 55.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.6e-29 134.4 65 84.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-26 125.9 146 48.6
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-23 115.2 145 45.5
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 3.6e-13 81.3 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.1e-12 78.2 108 44.4
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 8.4e-10 70.1 88 42.0
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.1e-09 69.7 101 41.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.6e-08 65.9 66 50.0


User provided reference genes

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