Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 5.0e-126 454.5 239 100.0
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.7e-49 200.3 104 90.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.9e-40 170.2 96 86.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 9.3e-40 167.9 220 53.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 6.6e-38 161.8 98 78.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.6e-36 157.1 98 77.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.1e-36 156.8 98 78.6
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.8e-36 156.4 99 77.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 6.2e-36 155.2 89 79.8
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-35 154.5 98 74.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.4e-35 153.3 89 79.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 9.0e-35 151.4 98 75.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.5e-34 150.6 93 75.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.5e-34 150.6 95 72.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.4e-34 149.4 93 75.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.4e-34 149.4 89 77.5
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.4e-34 149.4 89 77.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-33 147.5 89 76.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.7e-33 147.1 89 75.3
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.4e-33 145.2 89 76.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.4e-33 144.8 89 76.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.1e-32 144.4 89 71.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.4e-32 144.1 89 73.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.4e-32 143.3 90 73.3
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.2e-32 142.9 86 76.7
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.2e-32 142.5 97 67.0
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 4.2e-32 142.5 89 73.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 4.2e-32 142.5 89 76.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.2e-32 142.5 98 68.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.4e-32 142.1 89 71.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 5.4e-32 142.1 89 71.9
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 7.1e-32 141.7 89 69.7
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 7.1e-32 141.7 89 71.9
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 7.1e-32 141.7 86 75.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 9.3e-32 141.4 89 76.4
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 9.3e-32 141.4 89 71.9
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-31 141.0 89 73.0
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.6e-31 140.6 189 49.7
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.1e-31 140.2 89 74.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.7e-31 139.8 89 75.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.7e-31 139.8 98 70.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.5e-31 139.4 99 68.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-31 139.0 86 75.6
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.3e-30 137.5 84 72.6
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.3e-30 137.5 89 70.8
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.3e-30 136.7 100 64.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.0e-30 136.3 89 73.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.0e-30 136.3 97 69.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 5.1e-30 135.6 84 71.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.1e-30 135.6 187 44.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.7e-30 135.2 89 75.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.1e-29 134.4 84 71.4
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-29 134.0 89 75.3
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.9e-29 133.7 97 69.1
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.5e-29 133.3 89 70.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.3e-29 132.9 89 74.2
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.3e-29 132.9 89 69.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 4.3e-29 132.5 84 69.0
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 4.3e-29 132.5 89 70.8
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 5.6e-29 132.1 80 71.2
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 7.4e-29 131.7 84 71.4
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.4e-29 131.7 95 65.3
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-28 131.0 86 66.3
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-28 131.0 86 66.3
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-28 131.0 86 66.3
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.3e-28 131.0 89 73.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.3e-28 131.0 89 66.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.3e-28 131.0 89 66.3
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.6e-28 130.6 89 68.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.8e-28 129.0 85 67.1
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.2e-28 128.6 77 77.9
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.4e-27 127.5 89 65.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.8e-27 127.1 85 71.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.8e-27 127.1 92 64.1
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 3.1e-27 126.3 84 67.9
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.1e-27 126.3 79 73.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 4.0e-27 125.9 91 67.0
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.9e-27 125.2 84 70.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 9.0e-27 124.8 80 70.0
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.0e-27 124.8 91 65.9
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 9.0e-27 124.8 97 60.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-26 123.6 82 67.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.0e-26 123.6 82 67.1
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 2.6e-26 123.2 91 70.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.6e-26 123.2 84 69.0
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-26 122.5 84 65.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.5e-26 122.5 84 65.5
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 4.5e-26 122.5 75 78.7
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.5e-26 122.5 97 67.0
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 9.9e-26 121.3 68 88.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-25 119.4 238 41.6
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-25 118.2 89 64.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-24 117.9 89 62.9
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.4e-24 117.5 238 41.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.9e-24 117.1 90 64.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.4e-24 116.7 74 74.3
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 7.1e-24 115.2 87 64.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 7.1e-24 115.2 89 64.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 7.1e-24 115.2 75 72.0
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 9.3e-24 114.8 71 74.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.3e-24 114.8 97 58.8
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-23 113.6 71 70.4
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.1e-23 113.6 80 61.2
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 3.5e-23 112.8 89 65.2
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.6e-23 112.5 75 72.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 7.9e-23 111.7 80 58.8
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.8e-22 110.5 72 72.2
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.1e-22 109.0 80 58.8
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 8.7e-22 108.2 77 66.2
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.9e-21 107.1 87 58.6
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.5e-21 106.7 87 55.2
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.8e-20 103.2 64 71.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.8e-20 102.4 61 82.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.1e-19 101.3 88 55.7
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-18 97.4 80 50.0
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.5e-18 97.4 80 53.8
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.4e-18 96.3 114 47.4
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.0e-17 94.7 81 60.5
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-17 94.4 57 80.7
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.3e-17 94.4 78 56.4
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.3e-17 94.4 86 53.5
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 2.9e-17 93.2 60 76.7
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.8e-17 92.8 63 71.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 4.9e-17 92.4 80 51.2
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.5e-17 92.0 55 76.4
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.4e-16 90.9 93 49.5
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-16 90.9 82 51.2
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.2e-16 89.7 61 70.5
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.5e-16 89.0 60 70.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 5.5e-16 89.0 88 56.8
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.1e-15 87.0 75 50.7
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.3e-14 83.6 60 75.0
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.0e-14 83.2 96 45.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.9e-14 82.8 75 56.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 6.7e-14 82.0 92 50.0
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 6.7e-14 82.0 78 51.3
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 8.7e-14 81.6 67 62.7
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.9e-13 80.5 76 52.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.3e-13 79.7 68 57.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-12 77.4 66 59.1
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.2e-12 77.0 70 55.7
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.8e-12 76.6 48 64.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.7e-12 76.3 63 65.1
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 4.8e-12 75.9 49 75.5
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.1e-11 74.7 98 44.9
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 3.1e-11 73.2 48 77.1
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.1e-11 73.2 77 50.6
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.3e-11 72.4 51 76.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 5.3e-11 72.4 65 55.4
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 9.0e-11 71.6 42 83.3
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.2e-10 71.2 78 51.3
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.6e-10 70.1 42 81.0
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.4e-10 69.7 78 44.9
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.9e-10 68.9 80 50.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-09 67.8 47 70.2
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 2.9e-09 66.6 82 43.9
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.9e-09 66.6 48 64.6
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 2.9e-09 66.6 64 51.6
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 5.0e-09 65.9 49 55.1
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.5e-09 65.5 39 79.5
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 8.5e-09 65.1 41 73.2
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-08 64.3 71 42.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.4e-08 64.3 38 78.9
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 5.5e-08 62.4 37 81.1
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 7.2e-08 62.0 60 58.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 7.2e-08 62.0 61 52.5
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.6e-07 60.8 37 78.4
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 6.1e-07 58.9 57 52.6
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.4e-06 57.8 37 75.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.8e-06 57.4 48 58.3
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 3.0e-06 56.6 71 43.7


User provided reference genes

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