Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1796.2 874 100.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1644.8 876 91.0
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1628.6 871 91.0
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1604.3 874 89.1
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1512.7 877 83.7
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1505.7 876 83.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1501.5 877 83.5
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1500.3 874 82.4
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1500.0 874 83.3
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1431.4 869 80.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1429.1 867 80.5
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1338.9 869 75.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1323.5 866 73.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1316.6 868 72.7
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1308.5 871 72.1
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 864 72.5
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1302.7 869 72.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1302.3 867 72.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1301.6 869 72.3
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1300.0 864 72.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1298.1 875 71.2
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1297.0 873 72.1
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 881 71.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1291.9 873 71.5
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1290.8 874 71.3
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1289.6 874 71.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 874 71.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1287.7 867 71.0
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 874 70.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 864 71.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1282.3 867 71.2
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 875 70.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 864 71.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1278.5 874 70.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 864 71.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 870 71.0
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 866 71.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 864 70.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1271.9 871 71.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1270.0 865 70.8
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1269.2 864 70.7
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 864 69.8
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 868 71.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 864 69.6
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 864 69.9
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 878 68.9
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 864 69.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 868 69.7
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 871 68.7
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 861 68.6
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1240.3 862 68.3
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 871 68.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1239.2 867 68.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 878 67.2
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 864 68.9
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 863 68.7
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 886 67.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 875 68.2
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 865 68.2
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 864 68.1
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 865 68.2
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 863 68.3
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 869 67.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 864 68.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 864 68.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 864 68.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 863 67.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 865 68.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 864 68.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 863 68.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 864 67.2
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 864 67.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 864 67.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 864 67.7
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 864 67.2
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 887 66.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 865 67.5
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 874 66.6
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 868 67.2
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 866 67.4
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 865 67.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 863 67.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 862 66.1
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 867 66.1
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 864 67.0
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1185.2 875 65.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 876 64.8
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 864 66.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1153.3 827 68.2
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1133.6 859 64.5
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1114.0 755 72.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.8e-311 1072.4 863 60.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.1e-303 1044.6 691 71.1
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 8.5e-301 1036.9 860 60.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.2e-298 1027.7 868 60.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 9.2e-295 1016.9 643 74.8
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.3e-293 1013.1 862 55.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.7e-288 995.0 864 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.8e-286 987.3 869 55.0
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 7.8e-286 987.3 692 68.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 9.8e-273 943.7 868 52.3
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.4e-202 710.7 758 47.2
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.9e-162 577.4 477 61.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.2e-162 575.1 388 70.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 6.6e-144 515.8 459 56.2
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.2e-122 443.7 361 61.5
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 4.7e-89 333.6 307 57.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.1e-69 269.2 168 75.0
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 4.5e-68 263.8 175 78.9
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 4.7e-65 253.8 204 60.8
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.1e-44 185.3 171 53.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.9e-43 181.0 196 52.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 7.3e-34 150.2 216 42.6
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 8.9e-32 143.3 148 48.0
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.2e-29 133.3 116 57.8
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.1e-26 126.3 84 71.4
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-23 116.3 71 76.1
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-22 112.8 87 66.7
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 8.4e-22 110.2 73 71.2
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 7.8e-20 103.6 90 58.9
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-18 99.8 110 50.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.3e-16 90.9 296 25.3
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 8.4e-14 83.6 289 24.9
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.5e-12 78.2 319 25.7
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 6.0e-12 77.4 321 24.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 6.0e-12 77.4 94 44.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.9e-11 74.7 307 24.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.9e-10 72.4 239 25.1
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 9.6e-10 70.1 313 22.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.6e-10 70.1 317 24.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-09 69.7 64 50.0
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.6e-09 69.3 267 25.5
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 8.1e-09 67.0 231 24.7
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 4.0e-08 64.7 311 24.8
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.9e-08 63.9 32 81.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.8e-07 60.8 307 25.7
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.6e-07 60.5 214 24.3
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 7.6e-07 60.5 178 27.0
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.7e-06 59.3 83 41.0
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.8e-06 58.2 180 26.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.8e-06 58.2 309 22.0


User provided reference genes

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