Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 2013.0 1084 100.0
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1899.0 1084 93.3
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1891.3 1084 92.5
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1800.4 1048 90.7
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1791.9 1084 89.0
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1789.2 1098 88.3
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1788.1 1082 89.2
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1780.8 1082 88.4
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1777.7 1087 88.4
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1775.8 1086 88.5
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1744.2 1086 85.9
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1613.6 1095 78.5
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1602.0 1085 80.4
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1591.6 1057 79.9
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1590.1 1089 77.8
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1577.0 1079 78.4
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1567.0 1092 79.1
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1100 79.1
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1077 77.7
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1077 77.2
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1563.1 1095 75.7
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1563.1 1075 76.6
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1556.2 1093 77.0
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1553.9 1088 76.8
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1553.5 1071 78.2
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1548.9 1090 78.0
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1548.9 1093 77.5
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1548.1 1087 78.7
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1535.4 1071 77.4
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1535.0 1074 76.7
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1534.2 1089 77.0
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1532.7 1095 74.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1133 74.8
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1527.3 1072 77.0
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1526.5 1119 75.9
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1521.9 1096 73.9
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1519.6 1094 75.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1518.1 1074 75.7
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1518.1 1091 74.5
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1516.9 1058 77.2
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1115 72.7
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1513.8 1103 73.2
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1506.9 1093 74.3
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1506.9 1093 74.3
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1503.0 1094 76.1
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1501.9 868 86.5
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1495.3 1085 73.1
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1494.9 869 85.5
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1493.8 869 85.4
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1493.4 869 85.3
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1492.6 1086 72.7
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1489.9 1191 70.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1488.4 1081 73.4
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1485.3 1091 74.6
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1483.4 1066 75.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1483.0 1119 74.4
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1468.4 934 79.0
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1464.1 966 76.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1453.0 1088 71.4
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1451.4 931 78.2
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1448.7 1095 71.7
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 932 76.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1442.6 932 77.1
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1433.3 1070 69.9
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 1108 69.6
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1428.3 1104 69.7
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1425.2 1072 72.6
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1425.2 1083 72.3
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1419.4 1039 73.3
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1418.7 933 76.4
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1418.7 933 76.4
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1418.3 1087 70.7
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1418.3 1089 72.4
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1417.5 933 76.3
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1417.5 933 76.3
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1415.2 1085 68.7
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1414.4 869 82.0
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1410.6 967 74.7
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1392.5 928 75.6
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1390.9 1125 68.7
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1380.5 1102 69.8
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1380.2 1111 68.0
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1374.8 1082 72.4
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1374.0 1086 68.0
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1369.8 1135 68.1
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1086 68.0
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1350.5 997 70.4
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1349.7 1090 65.9
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1343.2 1060 68.0
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1326.6 1035 69.7
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1310.4 1086 65.0
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1298.1 1206 61.4
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1285.8 899 72.9
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1283.5 1247 57.7
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1276.9 1042 65.2
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1270.4 1094 66.3
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1268.4 925 70.4
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1217.6 1069 60.3
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1193.3 881 67.0
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1187.2 927 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1146.3 927 63.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1098.2 690 79.3
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1097.8 692 79.0
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1078.5 1072 59.0
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 1.6e-280 969.9 634 77.9
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 7.7e-275 951.0 743 63.3
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.5e-273 946.0 690 70.6
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.7e-270 934.9 546 83.7
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.6e-256 890.2 614 73.5
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.4e-196 691.0 570 62.6
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.2e-172 610.1 529 69.4
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 2.4e-159 567.4 445 64.0
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.7e-155 553.9 318 85.5
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.7e-123 446.8 450 55.6
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 2.3e-122 444.5 368 58.4
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 5.2e-122 443.4 392 69.1
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.5e-116 425.2 394 65.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 2.5e-100 371.3 248 81.0
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.2e-96 358.2 233 76.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 4.6e-94 350.5 276 65.6
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 8.6e-93 346.3 230 73.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.1e-91 341.7 322 57.5
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.4e-90 339.0 1024 27.1
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.7e-80 305.4 1072 26.2
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 3.8e-64 251.1 190 64.7
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 4.9e-64 250.8 134 86.6
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.4e-58 232.6 384 38.5
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-54 218.8 145 71.0
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 1.1e-44 186.4 99 88.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.3e-44 184.5 243 50.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 4.1e-42 177.9 210 47.1
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.9e-42 177.2 107 81.3
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.2e-40 172.2 224 44.2
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 3.8e-40 171.4 89 95.5
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.2e-39 167.9 149 58.4
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.4e-39 166.8 108 73.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.1e-38 165.6 103 72.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-36 159.8 483 28.6
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-35 156.4 149 62.4
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 8.2e-35 153.7 149 61.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 4.1e-34 151.4 236 40.3
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-33 147.9 119 58.8
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.7e-33 147.1 188 44.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.9e-30 137.1 86 84.9
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.0e-28 132.5 93 72.0
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.0e-25 122.5 108 61.1
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.0e-25 122.5 108 61.1
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.0e-25 122.5 108 61.1
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 7.2e-23 114.0 298 36.6
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 9.4e-23 113.6 62 88.7
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.0e-21 108.6 79 67.1
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.4e-20 104.8 115 54.8
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 7.5e-20 104.0 97 63.9
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-19 103.2 61 80.3
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-18 99.4 73 69.9
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.1e-18 98.2 67 68.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.9e-17 94.4 61 67.2
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-17 94.0 134 42.5
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-17 94.0 59 74.6
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 7.7e-17 94.0 47 100.0
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-16 92.8 79 59.5
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 1.1e-15 90.1 51 82.4
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-12 80.1 85 55.3
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.4e-12 78.2 62 62.9
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-12 77.8 106 43.4
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 4.8e-11 74.7 77 51.9
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 9.1e-10 70.5 77 50.6
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 1.3e-08 66.6 80 52.5
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 1.1e-07 63.5 72 45.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 4.2e-07 61.6 66 47.0
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 4.2e-07 61.6 58 55.2
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 4.7e-06 58.2 48 56.2


User provided reference genes

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