Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g040780 Medicago truncatula HOM05D008466 ORTHO05D010817 1.3e-102 376.3 188 100.0
arahy.Tifrunner.gnm1.ann1.48KRUQ Arachis hypogaea HOM05D008466 ORTHO05D010817 4.5e-82 308.1 205 81.5
Psat0s2778g0120 Pisum sativum HOM05D008923 ORTHO05D011423 1.0e-49 200.7 155 69.0
TPR.G7442 Trifolium pratense HOM05D008466 ORTHO05D010817 8.0e-47 191.0 97 95.9
VMungo0565G0006 Vigna mungo HOM05D008466 ORTHO05D010817 6.4e-44 181.4 162 66.0
arahy.Tifrunner.gnm1.ann1.A2DWY9 Arachis hypogaea HOM05D008466 ORTHO05D010817 5.2e-38 161.8 97 85.6
arahy.Tifrunner.gnm1.ann1.GWEJ34 Arachis hypogaea HOM05D008466 ORTHO05D010817 1.3e-33 147.1 102 81.4
LjContig00315g0013151 Lotus japonicus HOM05D008466 ORTHO05D010817 5.1e-33 145.2 73 100.0
TPR.G7441 Trifolium pratense HOM05D008466 ORTHO05D010817 5.1e-33 145.2 73 100.0
Lalb_Chr00c21g0406001 Lupinus albus HOM05D008466 ORTHO05D010817 4.3e-32 142.1 73 98.6
Lalb_Chr00c39g0409011 Lupinus albus HOM05D008466 ORTHO05D010817 4.3e-32 142.1 73 98.6
Lalb_Chr00c39g0409191 Lupinus albus HOM05D008466 ORTHO05D010817 4.3e-32 142.1 73 98.6
Lalb_Chr18g0049571 Lupinus albus HOM05D008466 ORTHO05D010817 4.3e-32 142.1 73 98.6
SalBow1G0863 Salvia bowleyana HOM05D008466 ORTHO05D010817 7.3e-32 141.4 73 97.3
Potri.007G062442 Populus trichocarpa HOM05D008466 ORTHO05D010817 2.1e-31 139.8 73 97.3
ATMG00285 Arabidopsis thaliana HOM05D008466 ORTHO05D010817 4.7e-31 138.7 73 94.5
CiPaw.11G081100 Carya illinoinensis HOM05D008466 ORTHO05D010817 1.4e-30 137.1 73 94.5
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 4.0e-30 135.6 75 92.0
A04p09550 Brassica napus HOM05D008466 ORTHO05D010817 2.0e-29 133.3 73 91.8
BolSC28t60321H Brassica oleracea HOM05D008466 ORTHO05D010817 2.0e-29 133.3 73 91.8
BraSC48t46287Z Brassica rapa HOM05D008466 ORTHO05D010817 2.0e-29 133.3 73 91.8
BraSC48t46336Z Brassica rapa HOM05D008466 ORTHO05D010817 2.0e-29 133.3 73 91.8
Nitab4.5_0014136g0010 Nicotiana tabacum HOM05D008466 ORTHO05D010817 9.9e-29 131.0 73 91.8
Glyma.01G136900 Glycine max HOM05D008466 ORTHO05D010817 2.9e-28 129.4 72 87.5
Zm00001eb187490 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Zm00001eb436220 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Zm00001eb436270 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Zm00001eb436350 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Zm00001eb436460 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Zm00001eb436500 Zea mays HOM05D008466 ORTHO05D010817 2.9e-28 129.4 73 90.4
Nitab4.5_0010033g0120 Nicotiana tabacum HOM05D008466 ORTHO05D010817 8.4e-28 127.9 73 87.7
Nitab4.5_0000172g1700 Nicotiana tabacum HOM05D008466 ORTHO05D010817 3.5e-26 122.5 73 84.9
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.9e-24 116.7 73 82.2
Nitab4.5_0000580g0160 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.5e-24 116.3 73 80.8
SEGI_14764 Sequoiadendron giganteum HOM05D008466 ORTHO05D010817 1.2e-23 114.0 73 80.8
BolSC28t60423H Brassica oleracea HOM05D008466 ORTHO05D010817 1.2e-21 107.5 62 85.5
Nitab4.5_0001952g0260 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.2e-21 107.5 65 84.6
Gorai.001G167700 Gossypium raimondii HOM05D008466 ORTHO05D010817 2.6e-21 106.3 70 77.1
Medtr8g059750 Medicago truncatula HOM05D008466 ORTHO05D010817 1.7e-20 103.6 73 78.1
Mapoly0157s0028 Marchantia polymorpha HOM05D008466 ORTHO05D010817 3.2e-19 99.4 73 74.0
BraSC48t46301Z Brassica rapa HOM05D008466 ORTHO05D010817 3.5e-18 95.9 52 88.5
Peaxi162Scf00651g00634 Petunia axillaris HOM05D008466 ORTHO05D010817 7.8e-18 94.7 72 72.2
RcHm_v2.0_MTg0498181 Rosa chinensis HOM05D008466 ORTHO05D010817 8.7e-17 91.3 47 97.9
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 3.1e-14 82.8 73 63.0
Carub.0006s2655 Capsella rubella HOM05D008466 ORTHO05D010817 1.2e-13 80.9 44 88.6
Nitab4.5_0001796g0330 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.0e-13 80.1 45 86.7
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 4.5e-13 79.0 45 86.7
SalBow1G0767 Salvia bowleyana HOM05D019046 ORTHO05D016904 4.5e-13 79.0 49 79.6
FAN20G2459 Fragaria x ananassa HOM05D008466 ORTHO05D010817 4.2e-11 72.4 38 86.8
RhsimMtG0002900 Rhododendron simsii HOM05D008923 ORTHO05D011423 5.4e-11 72.0 79 51.9
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 7.9e-10 68.2 68 54.4
CsaV3_UNG208750 Cucumis sativus L. HOM05D008466 ORTHO05D010817 8.7e-09 64.7 34 85.3
Actinidia34868 Actinidia chinensis HOM05D041439 ORTHO05D011423 2.5e-08 63.2 44 70.5
SabraMtG0004700 Salix brachista HOM05D000026 ORTHO05D016904 2.5e-08 63.2 32 93.8


User provided reference genes

Program Settings