Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 3.1e-109 398.7 229 100.0
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 4.4e-55 218.8 189 74.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.3e-54 214.9 176 73.9
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 4.1e-53 212.2 180 77.8
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.8e-48 196.8 188 68.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 5.2e-48 195.3 185 71.4
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.5e-42 177.2 216 53.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.4e-37 159.8 169 55.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.5e-36 156.0 181 54.1
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 2.8e-33 146.4 169 53.3
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 4.4e-31 139.0 186 56.5
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 8.3e-30 134.8 196 51.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.1e-29 134.4 209 50.7
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.3e-27 126.7 184 51.1
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.5e-26 124.0 193 49.7
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.3e-26 122.5 185 51.9
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.6e-26 122.1 183 53.6
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-25 120.6 182 51.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.1e-25 120.2 183 52.5
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.8e-25 119.8 181 52.5
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 3.6e-25 119.4 183 51.4
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.6e-25 119.4 185 51.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 4.7e-25 119.0 181 51.9
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-24 117.9 182 49.5
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-24 117.5 189 50.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-24 117.5 182 50.0
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-24 116.3 183 50.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 5.2e-24 115.5 183 50.3
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.2e-24 115.5 183 50.3
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 5.2e-24 115.5 175 54.3
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.2e-23 114.4 195 49.2
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.4e-23 112.5 187 49.7
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.9e-22 109.0 178 50.6
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.4e-22 108.6 164 53.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 5.4e-21 105.5 184 48.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.5e-20 102.8 179 47.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-19 100.9 242 38.0
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 6.6e-19 98.6 199 37.7
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.9e-18 97.1 213 34.3
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.5e-18 96.7 194 46.4
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 9.6e-18 94.7 191 46.1
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.6e-18 94.7 186 46.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.2e-17 94.4 171 39.2
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.2e-17 94.4 190 43.2
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.6e-17 94.0 83 63.9
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.8e-17 93.2 188 46.8
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.2e-15 87.8 160 39.4
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.7e-14 84.0 184 44.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.8e-14 82.8 72 66.7
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.8e-14 82.8 63 68.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 6.4e-14 82.0 180 43.9
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 6.4e-14 82.0 60 73.3
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.1e-13 81.3 225 31.6
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-13 80.9 184 36.4
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.9e-13 80.5 84 52.4
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.4e-13 80.1 161 37.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.4e-13 80.1 161 37.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 2.4e-13 80.1 181 34.8
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.2e-13 79.7 181 35.4
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.2e-13 79.7 93 52.7
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 4.2e-13 79.3 65 64.6
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.2e-13 79.3 90 50.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.4e-13 79.0 181 35.4
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 5.4e-13 79.0 184 35.9
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 5.4e-13 79.0 184 35.9
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 7.1e-13 78.6 67 62.7
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 7.1e-13 78.6 67 62.7
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 9.3e-13 78.2 132 40.9
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 9.3e-13 78.2 182 36.3
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 9.3e-13 78.2 182 36.3
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 9.3e-13 78.2 65 64.6
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.2e-12 77.8 131 38.9
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.1e-12 77.0 63 66.7
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 3.5e-12 76.3 146 35.6
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 4.6e-12 75.9 81 55.6
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.6e-12 75.9 56 67.9
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 7.8e-12 75.1 68 61.8
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.0e-11 74.7 55 69.1
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.3e-11 74.3 62 59.7
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.3e-11 74.3 59 67.8
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.7e-11 73.9 53 69.8
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 3.9e-11 72.8 83 54.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 3.9e-11 72.8 79 53.2
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 3.9e-11 72.8 60 73.3
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.9e-11 72.8 44 77.3
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 5.1e-11 72.4 85 50.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 6.6e-11 72.0 91 50.5
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.7e-11 71.6 67 61.2
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.1e-10 71.2 146 34.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.5e-10 70.9 88 48.9
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.5e-10 70.9 182 34.1
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.9e-10 70.5 67 61.2
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-10 70.5 67 61.2
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.5e-10 70.1 85 49.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.5e-10 70.1 93 50.5
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.5e-10 70.1 61 60.7
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 3.3e-10 69.7 98 43.9
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 3.3e-10 69.7 98 43.9
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 4.3e-10 69.3 80 45.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 4.3e-10 69.3 80 45.0
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.3e-10 69.3 85 50.6
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.3e-10 69.3 67 59.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.3e-10 69.3 91 49.5
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 5.6e-10 68.9 91 48.4
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 9.6e-10 68.2 79 51.9
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.6e-10 68.2 91 47.3
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-09 67.8 54 59.3
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.3e-09 67.8 94 46.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.6e-09 67.4 63 54.0
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-09 67.4 56 60.7
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 2.8e-09 66.6 103 40.8
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.8e-09 66.6 128 37.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 3.6e-09 66.2 91 47.3
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 4.8e-09 65.9 77 46.8
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 8.1e-09 65.1 79 48.1
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 8.1e-09 65.1 155 34.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 8.1e-09 65.1 53 54.7
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.1e-09 65.1 50 62.0
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.1e-08 64.7 182 31.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.4e-08 64.3 91 44.0
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.4e-08 63.5 91 47.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.4e-08 63.5 53 52.8
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.1e-08 63.2 85 61.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.1e-08 63.2 53 52.8
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 4.0e-08 62.8 79 44.3
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 4.0e-08 62.8 146 45.2
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 5.3e-08 62.4 49 61.2
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.3e-08 62.4 94 43.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 6.9e-08 62.0 85 47.1
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 6.9e-08 62.0 85 43.5
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 9.0e-08 61.6 77 45.5
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 9.0e-08 61.6 92 44.6
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 9.0e-08 61.6 65 55.4
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 9.0e-08 61.6 91 46.2
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.2e-07 61.2 76 65.8
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.2e-07 61.2 86 45.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.5e-07 60.8 80 48.8
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-07 60.8 90 41.1
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 2.0e-07 60.5 85 43.5
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 2.0e-07 60.5 72 47.2
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.6e-07 60.1 90 45.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.6e-07 60.1 79 40.5
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.4e-07 59.7 85 44.7
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 3.4e-07 59.7 91 45.1
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.4e-07 59.7 90 42.2
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.4e-07 59.3 79 46.8
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.4e-07 59.3 77 42.9
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.4e-07 59.3 71 46.5
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.4e-07 59.3 98 38.8
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.4e-07 59.3 90 42.2
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 4.4e-07 59.3 53 60.4
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 5.8e-07 58.9 84 40.5
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.8e-07 58.9 55 63.6
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 7.6e-07 58.5 71 46.5
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 7.6e-07 58.5 81 58.0
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 9.9e-07 58.2 90 42.2
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 9.9e-07 58.2 80 46.2
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.3e-06 57.8 90 41.1
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.3e-06 57.8 91 42.9
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.7e-06 57.4 76 43.4
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.7e-06 57.4 79 43.0
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.2e-06 57.0 77 41.6
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.2e-06 57.0 120 35.8
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 2.2e-06 57.0 203 34.5
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.2e-06 57.0 47 53.2
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 2.9e-06 56.6 103 38.8
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 2.9e-06 56.6 86 45.3
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 3.8e-06 56.2 84 41.7
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 3.8e-06 56.2 84 41.7
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 3.8e-06 56.2 84 41.7
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 3.8e-06 56.2 86 39.5
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 4.9e-06 55.8 55 50.9
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 4.9e-06 55.8 53 54.7
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 6.4e-06 55.5 61 47.5
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 6.4e-06 55.5 101 40.6
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 8.4e-06 55.1 84 41.7
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 8.4e-06 55.1 84 41.7
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 8.4e-06 55.1 84 41.7
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 8.4e-06 55.1 52 53.8


User provided reference genes

Program Settings